Re: [PATCH] gnu: Add hmmer

[Ben Woodcroft <b.woodcroft@uq.edu.au>]

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On 21/06/15 19:51, Ricardo Wurmus wrote:
> The version number is also used in other parts of the URL.  How about
> this instead (not tested):
Works just fine - attached.

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From d49710b5a87bfdbe3c12222fd7f42f4fc67875e5 Mon Sep 17 00:00:00 2001
From: Ben Woodcroft <donttrustben@gmail.com>
Date: Sun, 21 Jun 2015 20:15:31 +1000
Subject: [PATCH] gnu: Add hmmer.

* gnu/packages/bioinformatics.scm (hmmer): New variable.
---
 gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8dfaff3..bb5f942 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1032,6 +1032,30 @@ several alignment strategies enable effective alignment of RNA-seq reads, in
 particular, reads spanning multiple exons.")
     (license license:gpl3+)))
 
+(define-public hmmer
+  (package
+    (name "hmmer")
+    (version "3.1b2")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "http://selab.janelia.org/software/hmmer"
+                    (version-prefix version 1) "/"
+                    version "/hmmer-" version ".tar.gz"))
+              (sha256
+               (base32
+                "0djmgc0pfli0jilfx8hql1axhwhqxqb8rxg2r5rg07aw73sfs5nx"))))
+    (build-system gnu-build-system)
+    (native-inputs `(("perl", perl)))
+    (home-page "http://hmmer.janelia.org")
+    (synopsis "Biosequence analysis using profile hidden Markov models")
+    (description
+     "HMMER is used for searching sequence databases for homologs of protein
+sequences, and for making protein sequence alignments.  It implements methods
+using probabilistic models called profile hidden Markov models (profile
+HMMs).")
+    (license license:gpl3+)))
+
 (define-public htseq
   (package
     (name "htseq")
-- 
2.1.4