From 7afc66fcf58e75e3738edf31f3cf1da0c1fe4488 Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Sun, 21 Jun 2015 18:49:56 +1000 Subject: [PATCH] gnu: Add hmmer. * gnu/packages/bioinformatics.scm (hmmer): New variable. --- gnu/packages/bioinformatics.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8dfaff3..a41d0f5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1032,6 +1032,29 @@ several alignment strategies enable effective alignment of RNA-seq reads, in particular, reads spanning multiple exons.") (license license:gpl3+))) +(define-public hmmer + (package + (name "hmmer") + (version "3.1b2") + (source (origin + (method url-fetch) + (uri (string-append + "http://selab.janelia.org/software/hmmer3/3.1b2/hmmer-" + version ".tar.gz")) + (sha256 + (base32 + "0djmgc0pfli0jilfx8hql1axhwhqxqb8rxg2r5rg07aw73sfs5nx")))) + (build-system gnu-build-system) + (native-inputs `(("perl", perl))) + (home-page "http://hmmer.janelia.org") + (synopsis "Biosequence analysis using profile hidden Markov models") + (description + "HMMER is used for searching sequence databases for homologs of protein +sequences, and for making protein sequence alignments. It implements methods +using probabilistic models called profile hidden Markov models (profile +HMMs).") + (license license:gpl3+))) + (define-public htseq (package (name "htseq") -- 2.1.4