From: Ben Woodcroft <b.woodcroft@uq.edu.au>
To: "guix-devel@gnu.org" <guix-devel@gnu.org>
Subject: [PATCH] gnu: Add hmmer
Date: Sun, 21 Jun 2015 18:52:09 +1000 [thread overview]
Message-ID: <55867B39.3020207@uq.edu.au> (raw)
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One of my favourite pieces of software.
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From 7afc66fcf58e75e3738edf31f3cf1da0c1fe4488 Mon Sep 17 00:00:00 2001
From: Ben Woodcroft <donttrustben@gmail.com>
Date: Sun, 21 Jun 2015 18:49:56 +1000
Subject: [PATCH] gnu: Add hmmer.
* gnu/packages/bioinformatics.scm (hmmer): New variable.
---
gnu/packages/bioinformatics.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8dfaff3..a41d0f5 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1032,6 +1032,29 @@ several alignment strategies enable effective alignment of RNA-seq reads, in
particular, reads spanning multiple exons.")
(license license:gpl3+)))
+(define-public hmmer
+ (package
+ (name "hmmer")
+ (version "3.1b2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://selab.janelia.org/software/hmmer3/3.1b2/hmmer-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0djmgc0pfli0jilfx8hql1axhwhqxqb8rxg2r5rg07aw73sfs5nx"))))
+ (build-system gnu-build-system)
+ (native-inputs `(("perl", perl)))
+ (home-page "http://hmmer.janelia.org")
+ (synopsis "Biosequence analysis using profile hidden Markov models")
+ (description
+ "HMMER is used for searching sequence databases for homologs of protein
+sequences, and for making protein sequence alignments. It implements methods
+using probabilistic models called profile hidden Markov models (profile
+HMMs).")
+ (license license:gpl3+)))
+
(define-public htseq
(package
(name "htseq")
--
2.1.4
next reply other threads:[~2015-06-21 8:52 UTC|newest]
Thread overview: 10+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-06-21 8:52 Ben Woodcroft [this message]
2015-06-21 9:51 ` [PATCH] gnu: Add hmmer Ricardo Wurmus
2015-06-21 10:17 ` Ben Woodcroft
2015-06-21 17:17 ` Mark H Weaver
2015-06-21 18:11 ` Pjotr Prins
2015-06-21 18:23 ` Ricardo Wurmus
2015-06-24 1:37 ` Ben Woodcroft
2015-06-24 1:48 ` Ben Woodcroft
2015-06-24 1:52 ` Ben Woodcroft
2015-06-24 4:41 ` Mark H Weaver
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