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Sun, 21 Apr 2024 03:31:23 +0200 Received: by submission01.runbox with esmtpsa [Authenticated ID (1174703)] (TLS1.2:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.93) id 1ryM2x-00CaOL-DJ; Sun, 21 Apr 2024 03:31:11 +0200 Message-ID: <45ead385-2097-4e1b-98f9-6ad78b3043ce@runbox.com> Date: Sat, 20 Apr 2024 18:31:06 -0700 MIME-Version: 1.0 User-Agent: Mozilla Thunderbird Subject: Re: packaging python-cyvcf2 To: Ricardo Wurmus , Alexis Simon via Guix-Science Cc: Simon Tournier , help-guix References: <87il1eb867.fsf@gmail.com> <7b845ef7-f15e-45b9-9a31-e645ce736ec4@runbox.com> <877cgv3uft.fsf@elephly.net> Content-Language: en-US In-Reply-To: <877cgv3uft.fsf@elephly.net> Content-Type: text/plain; charset=UTF-8; format=flowed Content-Transfer-Encoding: 7bit Received-SPF: pass client-ip=2a0c:5a00:149::26; envelope-from=alexis.simon@runbox.com; helo=mailtransmit05.runbox.com X-Spam_score_int: -27 X-Spam_score: -2.8 X-Spam_bar: -- X-Spam_report: (-2.8 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_LOW=-0.7, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_FILL_THIS_FORM_SHORT=0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: guix-science@gnu.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , From: Alexis Simon via Guix-Science Reply-To: Alexis Simon Errors-To: guix-science-bounces+larch=yhetil.org@gnu.org Sender: guix-science-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN X-Migadu-Spam-Score: -5.44 X-Spam-Score: -5.44 X-Migadu-Queue-Id: C38F712BA9 X-Migadu-Scanner: mx13.migadu.com X-TUID: pxahqLet1xWZ Hi, this is great, thanks for fixing the tests and improving the packaging. On 18/04/2024 02:13, Ricardo Wurmus wrote: > Hi, > >> I've abandoned running the tests though, I'm hitting a module not >> found error. pytest doesn't manage to load the just built module, >> probably an issue with the paths. > > It's an actual problem with the build. You need to build the cython > extension first. I've attached the working package definition. > > I'd like to add this to gnu/packages/bioinformatics.scm. I'd like to > set authorship of the commit to you. Is the name and email address I > used for attribution correct? (See the attached commit.) > Yes those info are correct, thanks for including it! Cheers, Alexis