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Wed, 30 Sep 2020 13:41:10 +0200 (CEST) Received: from SW-IT-P-EX1.mdc-berlin.net (mgw1.mdc-berlin.de [141.80.113.54]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS; Wed, 30 Sep 2020 13:41:10 +0200 (CEST) Received: from SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) by SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_128_GCM_SHA256) id 15.1.1979.3; Wed, 30 Sep 2020 13:41:09 +0200 Received: from SW-IT-P-EX1.mdc-berlin.net ([fe80::b00d:dcd5:bd6c:2cbe]) by SW-IT-P-EX1.mdc-berlin.net ([fe80::b00d:dcd5:bd6c:2cbe%18]) with mapi id 15.01.1979.006; Wed, 30 Sep 2020 13:41:09 +0200 From: "Hong.Li@mdc-berlin.de" To: =?Windows-1252?Q?Ludovic_Court=E8s?= , zimoun Subject: Re: [ext] Re: failed to install the python-umap-learn package Thread-Topic: [ext] Re: failed to install the python-umap-learn package Thread-Index: AQHWkAlAHLkezWAmw0aTlJ5xth0H3ql/tEXf///rlgCAAU9K24AALS85 Date: Wed, 30 Sep 2020 11:41:09 +0000 Message-ID: <4582e2f82eba477fa84352c004a0ce15@mdc-berlin.de> References: <87r1qk65ez.fsf@gnu.org> , <87wo0b3ao7.fsf@inria.fr> In-Reply-To: <87wo0b3ao7.fsf@inria.fr> Accept-Language: en-GB, de-DE, en-US Content-Language: en-GB X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [141.80.113.52] x-tm-as-product-ver: SMEX-14.0.0.3031-8.6.1012-25696.006 x-tm-as-result: No-10--10.383200-8.000000 x-tmase-matchedrid: Rp71wniPtoO+cA2OBw2FFmg4D2QV/2zL6r3HCixfuKcc4ri4RJV/1RmS Audbgo9drCWN/Y4UqR+UdPI31lBDgk5diCa8ldUhJDuWzfvz/MerBTvV3OvRKzWNiLy2uJsfFxa 3UrO1/9tZxWJAjB5QNwJZUTDWynxtw5pmRXjG0Wgh/RMTVV2426gJ/sh288AntTBPbGIfr4dH3n jQKKih+9zbM/bbiGnqw3Qv4CH6OOTEU+G4PfM49ZzEHTUOuMX3CqIE7aqEIgYFSmV+BE8Fj1pNb XTsWM8cXWVu9nRg1gL7iGV8G0sWBV/8tX/1KHzFHYlKHmVlZciNY/pqxovzxUI1u+CsLEr0RQD5 XOFRjELnURBW+D2D08eEbHXUIOeJtoa09hOf75HHmyDJSEsI2+lUxvXGcRIy4w7R7P4I0tLSv7p ofHrBGThO3RNqJIX+I0T7f+ldqujOPLClVUvWEqmvdEdMifXc4I1a4XUNSfX00JWyRMim9nH8FG 2651gIvMtwl03rajxnWd5HQgV7VjQeeP9CEyOtpgIHgenXJXJkbdIIs/tC0ohIjrzeyQMKDH6FB Bzx1Eu4oPkqxH17jOD4gZO6nQ4jfn4iGFMOjcE+QgttMc2nmxwMMtF4a3g9Pj+DBIy+IRSUg5UD 6AlF0szIEYdVcVQOfyYDewMOrQC1MF0/qNNIN7JRBnLixjoqpfzLa08EuFCBh7X7yN7ru9j0Jkz FGiMrtKTdP9VQFfdvnnqabGr/8K8e8eBqaP6r x-tm-as-user-approved-sender: Yes x-tm-as-user-blocked-sender: No x-tmase-result: 10--10.383200-8.000000 x-tmase-version: SMEX-14.0.0.3031-8.6.1012-25696.006 x-tm-snts-smtp: E0EDA7BB7BF223696EA2C9DECEED838AB146D2F7D9160F46FB9F4C8F09724F382000:F MIME-Version: 1.0 Received-SPF: pass client-ip=194.95.232.172; envelope-from=Hong.Li@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-detected-operating-system: by eggs.gnu.org: First seen = 2020/09/30 07:41:12 X-ACL-Warn: Detected OS = Linux 2.2.x-3.x [generic] [fuzzy] X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, HTML_MESSAGE=0.001, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action Content-Type: text/plain; charset="Windows-1252" Content-Transfer-Encoding: quoted-printable X-Content-Filtered-By: Mailman/MimeDel 2.1.23 X-BeenThere: help-guix@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: "help-guix@gnu.org" Errors-To: help-guix-bounces+larch=yhetil.org@gnu.org Sender: "Help-Guix" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=fail (body hash did not verify) header.d=mdc-berlin.de header.s=mdc header.b=aQEKySKa; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of help-guix-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=help-guix-bounces@gnu.org X-Spam-Score: 1.09 X-TUID: HqpWuITQXNA4 Dear Ludo and Simon, Thanks for the reply. Unfortunately, I still have errors to install python-umap-learn package (de= pendencies error), see messages below: $ guix time-machine --commit=3Dcd5406effa34fa5cfda7eb7bbd2ccaf5201cf523 -- = package -p guix/new/.guix-profile -i python3 python-umap-learn Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.or= g/git/guix.git'... Updating channel 'guix-bimsb' from Git repository at 'https://github.com/BI= MSBbioinfo/guix-bimsb.git'... Updating channel 'guix-past' from Git repository at 'https://gitlab.inria.f= r/guix-hpc/guix-past'... Updating channel 'guix-bimsb-nonfree' from Git repository at 'https://githu= b.com/BIMSBbioinfo/guix-bimsb-nonfree.git'... substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100.0% The following derivations will be built: /gnu/store/6h3y0lp2mg8rlqbaam26n8dn6yfafrv7-compute-guix-derivation.drv /gnu/store/dfglc6l495466asp04ajwqlqdi2bgn6d-module-import-compiled.drv /gnu/store/zgi9gikccaa882a8amivvc0wlc7x610i-module-import.drv building /gnu/store/zgi9gikccaa882a8amivvc0wlc7x610i-module-import.drv... building /gnu/store/dfglc6l495466asp04ajwqlqdi2bgn6d-module-import-compiled= .drv... building /gnu/store/6h3y0lp2mg8rlqbaam26n8dn6yfafrv7-compute-guix-derivatio= n.drv... Computing Guix derivation for 'x86_64-linux'... / substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100.0% The following derivations will be built: /gnu/store/fqaf4nrmvyjclisrf4b8chx0idlm1xrv-profile.drv /gnu/store/c718qi7pdrzshrppv03v91sf6057j5fm-guix-bimsb-nonfree.drv /gnu/store/fh3306a50cnh1l6y6dij2l6243d6cvc2-inferior-script.scm.drv /gnu/store/flj6npydjr8fxv3g30qfw4gxsg77q48a-guix-bimsb.drv /gnu/store/z4ckz3745wzng8bn53n22kc0ib3h61p8-inferior-script.scm.drv /gnu/store/jvffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv /gnu/store/ydj320kw2ylvkkzvs39nn1qsy5ykpmvw-module-import-compiled.drv /gnu/store/p7727k2lldx5s2h2kr71i74999np2pl2-module-import-compiled.drv /gnu/store/xzzd9bvs0rm71clvrbpk937hban06yh2-inferior-script.scm.drv /gnu/store/y7vc292wihdzias98dyzxfbnd24szc04-profile.drv The following profile hooks will be built: /gnu/store/fv1gghy2a7m3s6bbpal32xbl8dfnw5dz-ca-certificate-bundle.drv /gnu/store/lz2s0p1k6ppjc0mjrq8ylcb82f2bwwif-guix-package-cache.drv /gnu/store/pq81nf3xdhkbrmfaig1m2mc0h0519ygl-info-dir.drv /gnu/store/s638gz72pfazskd3j0l5labcfkgnxz44-fonts-dir.drv /gnu/store/x43hvdc1rrsqhi6zy5p9wn8g1la2rw1x-manual-database.drv building /gnu/store/jvffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv... |builder for `/gnu/store/jvffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv' fa= iled to produce output path `/gnu/store/gg8fs00h7vqx29icijxpd7w99z1p8lmf-gu= ix-past' build of /gnu/store/jvffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv failed View build log at '/gnu/var/log/guix/drvs/jv/ffmvaz1rm0q11c57wmsp08h0slj9ym= -guix-past.drv'. cannot build derivation `/gnu/store/fqaf4nrmvyjclisrf4b8chx0idlm1xrv-profil= e.drv': 1 dependencies couldn't be built guix time-machine: error: build of `/gnu/store/fqaf4nrmvyjclisrf4b8chx0idlm= 1xrv-profile.drv' failed [hli@max-login3.mdc-berlin.net:~] $ guix time-machine --commit=3Dcac674d99d= c4a332e6210c57ec7f1b8164f66642 -- package -p guix/new/.guix-profile -i pyth= on3 python-umap-learn Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.or= g/git/guix.git'... ^C [hli@max-login3.mdc-berlin.net:~] $ guix time-machine --commit=3Dcac674d99d= c4a332e6210c57ec7f1b8164f66642 -- package -p guix/new/.guix-profile -i pyth= on3 python-umap-learn Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.or= g/git/guix.git'... Updating channel 'guix-bimsb' from Git repository at 'https://github.com/BI= MSBbioinfo/guix-bimsb.git'... Updating channel 'guix-past' from Git repository at 'https://gitlab.inria.f= r/guix-hpc/guix-past'... Updating channel 'guix-bimsb-nonfree' from Git repository at 'https://githu= b.com/BIMSBbioinfo/guix-bimsb-nonfree.git'... Computing Guix derivation for 'x86_64-linux'... WARNING: (guix build emacs= -build-system): imported module (guix build utils) overrides core binding `= delete' | The following derivation will be built: /gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv The following profile hook will be built: /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv building package cache... /builder for `/gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cach= e.drv' failed to produce output path `/gnu/store/9vpcvp00acz4lvglfs1k69a4i0= 5p5hbw-guix-package-cache' build of /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv= failed View build log at '/gnu/var/log/guix/drvs/ya/j4m68r6l9jhdb767psz79fm84hb6x6= -guix-package-cache.drv'. cannot build derivation `/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profil= e.drv': 1 dependencies couldn't be built guix time-machine: error: build of `/gnu/store/zz2557r32hsq2ksa53ix4ygaskkr= s2qi-profile.drv' failed best regards, Hong ________________________________ From: Ludovic Court=E8s Sent: 30 September 2020 10:56:24 To: zimoun Cc: Li, Hong; help-guix@gnu.org Subject: [ext] Re: failed to install the python-umap-learn package Hi, zimoun skribis: > Thank you for pointing out the issue. Using the Guix Data Service, > > https://data.guix.gnu.org/repository/1/branch/master/package/python-uma= p-learn/output-history [...] > From the Guix Data Service, the first offending commit is > cac674d99dc4a332e6210c57ec7f1b8164f66642 which updates python-cython. Neat! We should put that that to good use somehow to quickly notice and fix regressions: with IRC/email notifications, =91guix weather=92 reporting info from the Data Service, things like that. Ludo=92.