Re: [ext] Re: failed to install the python-umap-learn package

["Hong.Li@mdc-berlin.de" <Hong.Li@mdc-berlin.de>]

Dear Ludo and Simon,


Thanks for the reply.

Unfortunately, I still have errors to install python-umap-learn package (dependencies error), see messages below:


$ guix time-machine --commit=cd5406effa34fa5cfda7eb7bbd2ccaf5201cf523 -- package -p guix/new/.guix-profile -i python3 python-umap-learn
Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.org/git/guix.git'...
Updating channel 'guix-bimsb' from Git repository at 'https://github.com/BIMSBbioinfo/guix-bimsb.git'...
Updating channel 'guix-past' from Git repository at 'https://gitlab.inria.fr/guix-hpc/guix-past'...
Updating channel 'guix-bimsb-nonfree' from Git repository at 'https://github.com/BIMSBbioinfo/guix-bimsb-nonfree.git'...
substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100.0%
The following derivations will be built:
   /gnu/store/6h3y0lp2mg8rlqbaam26n8dn6yfafrv7-compute-guix-derivation.drv
   /gnu/store/dfglc6l495466asp04ajwqlqdi2bgn6d-module-import-compiled.drv
   /gnu/store/zgi9gikccaa882a8amivvc0wlc7x610i-module-import.drv
building /gnu/store/zgi9gikccaa882a8amivvc0wlc7x610i-module-import.drv...
building /gnu/store/dfglc6l495466asp04ajwqlqdi2bgn6d-module-import-compiled.drv...
building /gnu/store/6h3y0lp2mg8rlqbaam26n8dn6yfafrv7-compute-guix-derivation.drv...
Computing Guix derivation for 'x86_64-linux'... /
substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100.0%
The following derivations will be built:
   /gnu/store/fqaf4nrmvyjclisrf4b8chx0idlm1xrv-profile.drv
   /gnu/store/c718qi7pdrzshrppv03v91sf6057j5fm-guix-bimsb-nonfree.drv
   /gnu/store/fh3306a50cnh1l6y6dij2l6243d6cvc2-inferior-script.scm.drv
   /gnu/store/flj6npydjr8fxv3g30qfw4gxsg77q48a-guix-bimsb.drv
   /gnu/store/z4ckz3745wzng8bn53n22kc0ib3h61p8-inferior-script.scm.drv
   /gnu/store/jvffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv
   /gnu/store/ydj320kw2ylvkkzvs39nn1qsy5ykpmvw-module-import-compiled.drv
   /gnu/store/p7727k2lldx5s2h2kr71i74999np2pl2-module-import-compiled.drv
   /gnu/store/xzzd9bvs0rm71clvrbpk937hban06yh2-inferior-script.scm.drv
   /gnu/store/y7vc292wihdzias98dyzxfbnd24szc04-profile.drv
The following profile hooks will be built:
   /gnu/store/fv1gghy2a7m3s6bbpal32xbl8dfnw5dz-ca-certificate-bundle.drv
   /gnu/store/lz2s0p1k6ppjc0mjrq8ylcb82f2bwwif-guix-package-cache.drv
   /gnu/store/pq81nf3xdhkbrmfaig1m2mc0h0519ygl-info-dir.drv
   /gnu/store/s638gz72pfazskd3j0l5labcfkgnxz44-fonts-dir.drv
   /gnu/store/x43hvdc1rrsqhi6zy5p9wn8g1la2rw1x-manual-database.drv
building /gnu/store/jvffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv...
|builder for `/gnu/store/jvffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv' failed to produce output path `/gnu/store/gg8fs00h7vqx29icijxpd7w99z1p8lmf-guix-past'
build of /gnu/store/jvffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv failed
View build log at '/gnu/var/log/guix/drvs/jv/ffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv'.
cannot build derivation `/gnu/store/fqaf4nrmvyjclisrf4b8chx0idlm1xrv-profile.drv': 1 dependencies couldn't be built
guix time-machine: error: build of `/gnu/store/fqaf4nrmvyjclisrf4b8chx0idlm1xrv-profile.drv' failed
[hli@max-login3.mdc-berlin.net:~] $ guix time-machine --commit=cac674d99dc4a332e6210c57ec7f1b8164f66642 -- package -p guix/new/.guix-profile -i python3 python-umap-learn
Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.org/git/guix.git'...
^C
[hli@max-login3.mdc-berlin.net:~] $ guix time-machine --commit=cac674d99dc4a332e6210c57ec7f1b8164f66642 -- package -p guix/new/.guix-profile -i python3 python-umap-learn
Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.org/git/guix.git'...
Updating channel 'guix-bimsb' from Git repository at 'https://github.com/BIMSBbioinfo/guix-bimsb.git'...
Updating channel 'guix-past' from Git repository at 'https://gitlab.inria.fr/guix-hpc/guix-past'...
Updating channel 'guix-bimsb-nonfree' from Git repository at 'https://github.com/BIMSBbioinfo/guix-bimsb-nonfree.git'...
Computing Guix derivation for 'x86_64-linux'...  WARNING: (guix build emacs-build-system): imported module (guix build utils) overrides core binding `delete'                                                |
The following derivation will be built:
   /gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv
The following profile hook will be built:
   /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv
building package cache...
/builder for `/gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv' failed to produce output path `/gnu/store/9vpcvp00acz4lvglfs1k69a4i05p5hbw-guix-package-cache'
build of /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv failed
View build log at '/gnu/var/log/guix/drvs/ya/j4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv'.
cannot build derivation `/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv': 1 dependencies couldn't be built
guix time-machine: error: build of `/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv' failed


best regards,

Hong

________________________________
From: Ludovic Courtès <ludovic.courtes@inria.fr>
Sent: 30 September 2020 10:56:24
To: zimoun
Cc: Li, Hong; help-guix@gnu.org
Subject: [ext] Re: failed to install the python-umap-learn package

Hi,

zimoun <zimon.toutoune@gmail.com> skribis:

> Thank you for pointing out the issue.  Using the Guix Data Service,
>
>   https://data.guix.gnu.org/repository/1/branch/master/package/python-umap-learn/output-history

[...]

> From the Guix Data Service, the first offending commit is
> cac674d99dc4a332e6210c57ec7f1b8164f66642 which updates python-cython.

Neat!  We should put that that to good use somehow to quickly notice and
fix regressions: with IRC/email notifications, ‘guix weather’ reporting
info from the Data Service, things like that.

Ludo’.