From: Navid Afkhami <navid.afkhami@mdc-berlin.de>
To: 75466@debbugs.gnu.org
Cc: Navid Afkhami <navid.afkhami@mdc-berlin.de>
Subject: [bug#75466] [PATCH] gnu: Add python-ngesh.
Date: Thu, 9 Jan 2025 16:09:30 +0000 [thread overview]
Message-ID: <363c8d863b0105d719b128bbd0176cb5c6dd994d.1736438970.git.navid.afkhami@mdc-berlin.de> (raw)
* gnu/packages/bioinformatics.scm (python-ngesh): New variable.
Change-Id: If51f3075037647e319efa9468331677a845b30cb
---
gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 34a39a48f1..f524b53bad 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2880,6 +2880,33 @@ (define-public python-metacells
cells).")
(license license:expat)))
+(define-public python-ngesh
+ (package
+ (name "python-ngesh")
+ (version "1.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/tresoldi/ngesh")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "07sj4x95b5hvx57pw24f80sk4ag4hkg1z6wzym3pzi8n5gn85n1z"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-ete3 python-numpy python-six))
+ (native-inputs (list python-black python-flake8 python-pytest python-twine
+ python-wheel))
+ (home-page "https://github.com/tresoldi/ngesh")
+ (synopsis "Library for phylogenetic tree simulation")
+ (description
+ "Ngesh is a Python library and CLI tool for simulating phylogenetic trees and data.
+It is intended for benchmarking phylogenetic methods, especially in historical
+linguistics andstemmatology. The generation of stochastic phylogenetic trees
+also goes by the name simulationmethods for phylogenetic trees, synthetic data
+generation, or just phylogenetic tree simulation.")
+ (license license:expat)))
+
(define-public python-parabam
(package
(name "python-parabam")
base-commit: 66a1a1fe22aff54973ab5c33957a338b33b8274c
--
2.43.0
reply other threads:[~2025-01-09 16:11 UTC|newest]
Thread overview: [no followups] expand[flat|nested] mbox.gz Atom feed
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=363c8d863b0105d719b128bbd0176cb5c6dd994d.1736438970.git.navid.afkhami@mdc-berlin.de \
--to=navid.afkhami@mdc-berlin.de \
--cc=75466@debbugs.gnu.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this external index
https://git.savannah.gnu.org/cgit/guix.git
This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.