[bug#75015] [PATCH 00/38] Astro update 2024/12

[bug#75015] [PATCH 00/38] Astro update 2024/12

[Sharlatan Hellseher]

Astro update 2024/12

Hi Guix!

This month was pythonifictly pythonic, python-team branch has been merged and
brought new shining starts and also dark mater. Some core packages refreshed
(python-pytests 7.1.3->8.3.3, python-numpy 1.23.2->1.24.4 and more) which were
blocking to update others in astro collection.

Big thanks to Antero Mejr, Nicolas Graves, Vinicius Monego, Maxim Cournoyer,
Nicolas Goaziou, and Lars-Dominik Braun.

There is an ongoing work on python-team to resolve post merge issues.

Now about astro soft! As I was occupied with updates on python-team there are
not too may new Python packages but I've packaged Julia, it's so refreshfully
easy to do that comparing to python .^.^.

There are some major releases of python-czml3 (1.0.2->2.0.1), python-pynbody
(1.6.0->2.0.0), python-numcodecs (0.10.2->0.14.1) which damand more love to
resolve build issues and package missing inputs, it could be a task for the
next month.

The main highlights:

- Astropy has been refreshed to the latest (6.1.7) compatible with Python 3.10
  version. There is a major 7.0.0 release which hard requires Python 3.11+ and
  NumPy 2+
- HEALPix has been refreshed (3.8.3) the first new release for some time, as a
  follow up python-healpy refreshed as well which as not posible before.
- WCSLIB C library is refreshed (8.4).

The log:
 - added [8/8]
   - [X] julia-commonsolve :: Common solve function for scientific machine learning
   - [X] julia-compositionsbase :: Composition of morphisms
   - [X] julia-extents :: Shared Extent object for Julia spatial data
   - [X] julia-interfaces :: Macros to define and implement interfaces
   - [X] julia-performancetesttools :: Run script in a separate Julia process
   - [X] julia-precompiletools :: Reduce time-to-first-execution of Julia code
   - [X] julia-staticnumbers :: Static numbers in Julia
   - [X] python-pysat :: Supports science analysis across disparate data platforms
 - updated [23/23]
   - [X] calceph :: 4.0.1->4.0.3
   - [X] healpix :: 3.8.2->3.8.3
   - [X] indi :: 2.1.0->2.1.1
   - [X] julia-preferences :: 1.2.2->1.4.3
   - [X] python-asdf :: 3.3.0->4.0.0
   - [X] python-astropy :: 6.1.6->6.1.7
     - to 7.0.0, hard dependenicies on Python3.11+ and NumPy 2+
   - [X] python-bayesicfitting :: 3.2.2->3.2.3
   - [X] python-ci-watson :: 0.7.0->0.8.0
   - [X] python-cmyt :: 2.0.0->2.0.1
   - [X] python-crds :: 12.0.6->12.0.8
   - [X] python-extinction :: 0.4.6->0.4.7
   - [X] python-gwcs :: 0.21.0->0.22.1
   - [X] python-halotools :: 0.9.1->0.9.2
   - [X] python-healpy :: 1.16.6->1.18.0
   - [X] python-pysiaf :: 0.23.3->0.24.1
   - [X] python-spisea :: 2.1.11->2.1.13
   - [X] python-stdatamodels  :: 2.1.2->2.2.0
   - [X] python-stpipe :: 0.7.0->0.8.0
   - [X] python-sunpy :: 6.0.3->6.0.4
   - [X] python-viresclient :: 0.12.0->0.12.1
   - [X] python-webbpsf :: 1.4.0->1.5.0
     - [X] webbpsf-data :: 1.4.0->1.5.0
   - [X] splash :: 3.10.3->3.11.1
   - [X] wcslib :: 8.3->8.4

The build stats for x86_64-linux:
--8<---------------cut here---------------start------------->8---
for pkg in calceph healpix indi julia-commonsolve julia-compositionsbase \
julia-extents julia-interfaces julia-performancetesttools julia-precompiletools \
julia-preferences julia-staticnumbers python-asdf python-astropy \
python-bayesicfitting python-ci-watson python-cmyt python-crds python-extinction \
python-gwcs python-halotools python-healpy python-pysat python-pysiaf \
python-spisea python-stdatamodels python-stpipe python-sunpy python-viresclient \
python-webbpsf splash wcslib
do
./pre-inst-env guix build -q -k -P 2 $pkg
done

/gnu/store/y5d1sndw4xnigsdy68bfazn7zyg1nw1n-calceph-4.0.3
/gnu/store/icbcmc8iqcl4ybr0rm3sa7l8c3yqyjbf-healpix-3.8.3
/gnu/store/x5yf788crh4s2bf2183cwbagfq4d8g27-indi-2.1.1
/gnu/store/q46il4j89ggzsb2mqviy4lzq3z6ivc54-julia-commonsolve-0.2.4
/gnu/store/xr3h7w3d1kplpgv7l91991k53qrr3mpr-julia-compositionsbase-0.1.0
/gnu/store/fh48pj735031rdzrd48iwqwmkp1q4kix-julia-extents-0.1.4
/gnu/store/gpx1isfa157rw3bwsg1r2b0xfiknhps0-julia-interfaces-0.3.2
/gnu/store/m191vkqnpd5dxvm474v33j3hr5hgfz7s-julia-performancetesttools-0.1.3
/gnu/store/r8kr95vycqwi8vr2wgdvrz3h70qxg0q8-julia-precompiletools-1.2.1
/gnu/store/6a5xqd3hzwgxyy080ffj4592lzbqh4jx-julia-preferences-1.4.3
/gnu/store/crm1fwhsrw893hrbyr09408gpc4f3q2j-julia-jllwrappers-1.3.0
/gnu/store/v53xszdpny2wal11spwjm30vvlcs0d4w-julia-lame-jll-3.100.0+1
/gnu/store/gqhd0mkr5v6z4di2whz181zl9q63xsh8-julia-libiconv-jll-1.16.1+0
/gnu/store/srr615y03g4pfd3n1kdihij2gd90rx2z-julia-wayland-jll-1.17.0+3
/gnu/store/j2nc49cmc920f5aqg06dlvjz7r8i8wlk-julia-xorg-libx11-jll-1.6.9+2
/gnu/store/8vxj3xp7m341z5xcjx10f3dgcxjnb4rl-julia-pcre-jll-8.44.0+0
/gnu/store/h2dbhkpmk30ns7kmnnii2zxs4i4mbpnh-julia-libgcrypt-jll-1.8.7+0
/gnu/store/1m4537xmxrakmyyzchapvbgm616s4n6v-julia-xorg-libxrandr-jll-1.5.2+3
/gnu/store/si7zz9fl9ssar8nq3lplmjjlf55rslc8-julia-libtiff-jll-4.1.0+1
/gnu/store/0vi8zkwmm4xxr157h28qvw885r2skmy9-julia-xorg-libxinerama-jll-1.1.4+3
/gnu/store/a9ghpqfpzwa4sxrlh7s2abi7cs1knqp0-julia-x264-jll-2020.7.14+0
/gnu/store/rs434f2rrs7yy4q2l20rgpfh5zlcb7z4-julia-openssl-jll-1.1.1+2
/gnu/store/i26sh6g5gdk3rzlgljfvjl524lr444gd-julia-cfitsio-jll-4.0.0+0
/gnu/store/c5majm3jnjfip1gdnrr3d1glz9qxd3ws-julia-wcs-jll-7.7.0+0
/gnu/store/46vp7p41bpsdmwigihrnz0bg7incqfyk-julia-gr-jll-0.69.1+0
/gnu/store/b9s7lcs0h317b628mmvypcimn1wr64pr-julia-libglvnd-jll-1.3.0+2
/gnu/store/lsihy9ghy52fadkcnih42h2r713wa9hi-julia-sundials-jll-5.2.1+0
/gnu/store/bk1m0lklks5p644qhizg2ipc3pw2n7as-julia-xorg-xcb-util-keysyms-jll-0.4.0+1
/gnu/store/xw3g9qc2l5pqf5bpnyl8wa4jbnfnbpka-julia-libmount-jll-2.35.0+0
/gnu/store/wdr57gi6xx01z4bs1k6iw06f767r2p0r-julia-glib-jll-2.68.1+0
/gnu/store/dv7bg2a8d3yjy6lanzvsx5vjnxbn283r-julia-xorg-xkeyboard-config-jll-2.27.0+3
/gnu/store/0kri1i1sihpj7gcwb1ff1b6kd4jz1mxq-julia-xorg-libxau-jll-1.0.9+3
/gnu/store/0578wpx5gsjrz19nal3gcwss8s1gh8ad-julia-libsass-jll-3.5.5+0
/gnu/store/h63jlymyz3wrqb1x5jah96nr8qq21c28-julia-xorg-xtrans-jll-1.4.0+2
/gnu/store/ikriywx9l5cn3ihfawvwdid5qnnidfmm-julia-xorg-libpthread-stubs-jll-0.1.0+2
/gnu/store/dnkpmj72kiad3dhj5i5lm57ay0f432sr-julia-bzip2-jll-1.0.7+0
/gnu/store/prxkkfswfl5dngqfliqifa9w3wzbv588-julia-jpegturbo-jll-2.0.1+2
/gnu/store/1pf9m9g71i9y2as940rd344c7rh13l18-julia-wayland-protocols-jll-1.18.0+3
/gnu/store/989801afjiwnk4vviqygbixhlppkqvbs-julia-x265-jll-3.0.0+1
/gnu/store/w4yng9x5l54k2n8z3a8fi2n50ci9j44h-julia-xorg-xkbcomp-jll-1.4.2+3
/gnu/store/i0kyqaslaf4lk5yajpzw9fsdplk8pd5g-julia-libvorbis-jll-1.3.6+4
/gnu/store/y8p8hyc64g30m0zjy3pmmxmqw3fnqwby-julia-ffmpeg-jll-4.3.1+2
/gnu/store/xmqdbrvsg7s2yhz22nar4ww91h2y1pws-julia-freetype2-jll-2.13.1+0
/gnu/store/i6wrhb0cqw86kfrckhxl4s3xb9mih840-julia-xslt-jll-1.1.34+0
/gnu/store/lizyh4njfb4dj4ldgisk5fzh5r56manc-julia-gettext-jll-0.21.0+0
/gnu/store/8c7cjm1z64kj84dba15gfl69vz1jy7m8-julia-imagemagick-jll-6.9.10-12+3
/gnu/store/3l3k3m1mja3npn4amrr5z54byh0mah9j-julia-xorg-libxcb-jll-1.13.0+2
/gnu/store/6kb5z5b5qc1hjzbparb66r2j2qqnhnma-julia-xorg-libxfixes-jll-5.0.3+3
/gnu/store/fd8b4s5q0vxmracszmvhak63glw4911y-julia-pixman-jll-0.40.1+0
/gnu/store/sglmz6ns4f149pllbw5fpcfbar7jay17-julia-lzo-jll-2.10.1+0
/gnu/store/p0f5hl4lbc17vwcw68pba1jkqcyg9abm-julia-libgpg-error-jll-1.42.0+0
/gnu/store/piynkpd05szlh0fvxkkn9l9mr2sy9ys5-julia-xkbcommon-jll-0.9.1+3
/gnu/store/6s2l3rwkcx5f4gi5pxd030g9bpivpz2a-julia-xorg-libxkbfile-jll-1.1.0+3
/gnu/store/0m9khcsqb3qsjgxgvhv6z77aifm8fwk9-julia-fontconfig-jll-2.13.93+0
/gnu/store/7d68zzs006fhrs5rm0icvidpszc8yv5s-julia-xorg-libxcursor-jll-1.2.0+3
/gnu/store/cp77l8z59yb0839ym8h76zq6493xdl0f-julia-zlib-jll-1.2.12+1
/gnu/store/ljb4fk3cis407qz0g9bjkxp04hsa5pfk-julia-xorg-libxdmcp-jll-1.1.3+3
/gnu/store/29f1zy7n8qvvnxykacj5w715j9q0rql5-julia-xorg-xcb-util-jll-0.4.0+1
/gnu/store/aaiylz7k59rpf8q23d4ywbl6k9ml5dkq-julia-xorg-xcb-util-image-jll-0.4.0+1
/gnu/store/hjplh3w3kyla5m2ca9m9yjf4by3riv48-julia-fribidi-jll-1.0.5+5
/gnu/store/rl0r34ci0d5w1dq6l5fzbhnj961wqd8q-julia-glfw-jll-3.3.4+0
/gnu/store/wsc0sgz628lslhw5rkr91ddyn7wl0d05-julia-ogg-jll-1.3.4+0
/gnu/store/52m4260spjhmfk5ij1hwxdn6vcjycr9i-julia-compilersupportlibraries-jll-0.4.0+1
/gnu/store/z81amp4pigwyhcg4b6p7asxga9s09jc1-julia-qt5base-jll-5.15.2+0
/gnu/store/cp6m2ys4iq6wh0yllx42qhhqkri67k8h-julia-xorg-xcb-util-renderutil-jll-0.3.9+1
/gnu/store/dc401slxx8r4jl7czqpbbgkp995x89yq-julia-libass-jll-0.14.0+2
/gnu/store/0dwp1as3xchs7hhq6kvl09h0qhwbjqy0-julia-cairo-jll-1.16.0+5
/gnu/store/gx4fh8qpqp0j59rdyqxaav0l7bdf4b12-julia-libuuid-jll-2.36.0+0
/gnu/store/j4ph8pqfxq2ag1hm3p0qc36zk2f4mw7v-julia-openspecfun-jll-0.5.3+4
/gnu/store/4803yvss9xxwdn49z4kbj1iayzifwbri-julia-xml2-jll-2.9.12+0
/gnu/store/hq5z2f6barp9yi22iqsyak6qnfgbvl8b-julia-gumbo-jll-0.10.1+1
/gnu/store/yp2ys34yqp9vbx4mxq6vfw0pc4wdx56f-julia-xorg-libxrender-jll-0.9.10+3
/gnu/store/v6g9birbinc4xpnck04zkw1jdp07jjmp-julia-xorg-xcb-util-wm-jll-0.4.1+1
/gnu/store/jf7z19kqd714v289rbzr6ixygslxh5s0-julia-libffi-jll-3.3.0+0
/gnu/store/7pwfvqnkkv98grjkz9af4pbdm8g1g812-julia-opus-jll-1.3.1+1
/gnu/store/7g4nc2wgyxi3fpn3szrkh2g834v4rm5h-julia-erfa-jll-2.0.0+0
/gnu/store/81gpy4mdi4wfhnhw4cff2ixjyy8mrdai-julia-mbedtls-jll-2.26.0+0
/gnu/store/fjlz9qc2p9hlqywy3rwvwvcag3mms651-julia-expat-jll-2.2.10+0
/gnu/store/7fc7g6r3z1bzk40iy94djs8yv2bziyd5-julia-xorg-libxi-jll-1.7.10+3
/gnu/store/aagvla7bl51r4kp99sl7il14gzpy2cvj-julia-zstd-jll-1.5.0+0
/gnu/store/dvza8zs1rsd0jaqvrqfdchh69mvacaml-julia-libpng-jll-1.6.37+5
/gnu/store/vi8vk5si6r2zcaiwfpv1varr4j6040pz-julia-libfdk-aac-jll-0.1.6+2
/gnu/store/sx4g8h3fsbl9g3g52hx2jqhfkpj95r7w-julia-xorg-libxext-jll-1.3.4+2
/gnu/store/r8kr95vycqwi8vr2wgdvrz3h70qxg0q8-julia-precompiletools-1.2.1
/gnu/store/2q1md0d2f87klnzp99nk77zhxl56apdb-julia-staticnumbers-0.4.0
/gnu/store/spqrqg1b6k73qrlsqazia26h2bwgzjgj-python-ci-watson-0.8.0
/gnu/store/01y8jn4izfisdzm15j7zyrvf5lsh9d87-python-acstools-3.7.2
/gnu/store/906gjpy3xs24wmrbn4sv8l3kfvhfsz1r-python-extinction-0.4.7
/gnu/store/g41dhg1fp2srhr35ngn6fglm639kbikz-python-sncosmo-2.11.2
/gnu/store/nii8lfpcjbmkkl7m31h8h49nl3fd0kpm-python-halotools-0.9.2
/gnu/store/9253m7jj0l3ab4q4p0qvgdvbyvjmjs7j-python-healpy-1.18.0
/gnu/store/8r48kkdi8dy1d3xrpr0ps01iffffl5zv-python-holodeck-1.5.2
/gnu/store/19ygyzkh38kwpwa8r88isgp916hkl75g-python-pysat-3.2.1
/gnu/store/z6hkgs2mgk3c93dn6nj12jzv7iml666b-python-spisea-2.1.13
/gnu/store/9sf98wwg3aj6kzr1ifxs3ravw6qy1sny-python-viresclient-0.12.0
/gnu/store/y4j9hkhn18qzwhd69xv5ldjwhbwcgyan-python-webbpsf-1.5.0
/gnu/store/cnbh9nrbvdlzfa4csb411sfga17mkd72-splash-3.11.1
--8<---------------cut here---------------end--------------->8---

Failed due to python-team has been merged, some of them are resolved on
refreshed python-team branch.
--8<---------------cut here---------------start------------->8---
`/gnu/store/266v22mq1648nv0bmjxllrgx484r2i1n-python-gatspy-0.3.drv'
`/gnu/store/33vxpl5rc0wl8kfl6rhj4ngq1qx0j8z9-python-stcal-1.10.0.drv'
`/gnu/store/4b0fw6zi460d5489rjzai9znmmbhfb4l-python-jwst-1.16.1.drv'
`/gnu/store/4z77ficmydlpjd6ndx1vw6mrr2dn331m-python-poliastro-0.17.0.drv'
`/gnu/store/6lfg0iwc5b406s256zla7dhn3kkrzfzq-python-asdf-zarr-0.0.4.drv'
`/gnu/store/8mv5vs69yd7ky2x06f02daiwylbbxv5i-python-yt-astro-analysis-1.1.3.drv'
`/gnu/store/91jsp4sc4f971k9j6vqk133xnks3flhq-python-yt-4.4.0.drv'
`/gnu/store/agzlgzbbn1n1hr1wlmngcpxyq65mlayp-python-kanon-0.6.6.drv'
`/gnu/store/babrbw10558mrsn4qqkl9am4qw4s1yiq-python-jwst-reffiles-1.0.1.drv'
`/gnu/store/bi0zaji036gvk40ggp4n90cli8rqmyhc-python-glue-qt-0.3.1.drv'
`/gnu/store/gvsvp2y9bvp1w21m2azhdncixrk0bhmn-python-glue-core-1.21.1.drv'
`/gnu/store/ia57x97qkibaq4jcad6rwj8ifhpzi5vl-python-sunkit-image-0.5.1.drv'
`/gnu/store/jk4q73hpfnp09qqgf7r61hn85jhw0p9k-python-coolest-0.1.9.drv'
`/gnu/store/nalm4qh2mk883x3yk1ad1c3hhjdby6in-python-specreduce-1.4.1.drv'
`/gnu/store/qbb1b6hj5b0cbzsy03pi790cswk3kc60-python-naima-0.10.0.drv'
`/gnu/store/qva2izzq5hyykp4f3di3c1ka9246wvlm-python-glue-astronomy-0.10.0.drv'
`/gnu/store/yjmnac39fzkikxji5bkf8j068mgdiv33-python-pyxsim-4.4.2.drv'
--8<---------------cut here---------------end--------------->8---

Sharlatan Hellseher (38):
  gnu: julia-preferences: Update to 1.4.3.
  gnu: julia-dataapi: Update to 1.16.0.
  gnu: Add julia-precompiletools.
  gnu: Add julia-interfaces.
  gnu: Add julia-extents.
  gnu: Add julia-commonsolve.
  gnu: Add julia-compositionsbase.
  gnu: Add julia-staticnumbers.
  gnu: Add julia-performancetesttools.
  gnu: calceph: Update to 4.0.3.
  gnu: healpix: Update to 3.8.3.
  gnu: indi-2.0: Update to 2.1.1.
  gnu: splash: Update to 3.11.1.
  gnu: wcslib: Update to 8.4.
  gnu: python-astropy: Update to 6.1.7.
  gnu: python-asdf-standard: Adjust native inputs.
  gnu: python-asdf: Update to 4.0.0.
  gnu: python-bayesicfitting: Update to 3.2.3.
  gnu: python-ci-watson: Update to 0.8.0.
  gnu: python-cmyt: Update to 2.0.1.
  gnu: python-crds: Update to 12.0.8.
  gnu: python-extinction: Update to 0.4.7.
  gnu: python-gwcs: Update to 0.22.1.
  gnu: python-halotools: Update to 0.9.2.
  gnu: python-healpy: Update to 1.18.0.
  gnu: python-pysiaf: Update to 0.24.1.
  gnu: python-spisea: Update to 2.1.13.
  gnu: python-sunpy: Update to 6.0.4.
  gnu: webbpsf-data: Update to 1.5.0.
  gnu: python-webbpsf: Update to 1.5.0.
  gnu: python-stsci-stimage: Adjust inputs.
  gnu: Add python-asdf-3.
  gnu: python-rad: Adjust input.
  gnu: python-roman-datamodels: Adjust input.
  gnu: python-specutils: Fix build.
  gnu: python-stdatamodels: Update to 2.2.0.
  gnu: python-stpipe: Update to 0.8.0.
  gnu: Add python-pysat.

 gnu/packages/astronomy.scm | 300 ++++++++++++++++++++++++-------------
 gnu/packages/julia-xyz.scm | 180 +++++++++++++++++++++-
 2 files changed, 372 insertions(+), 108 deletions(-)


base-commit: 7d199bdc2bcd429b25378478be00c470501f8c3b
-- 
2.46.0

[bug#75015] [PATCH 01/38] gnu: julia-preferences: Update to 1.4.3.

[Sharlatan Hellseher]

* gnu/packages/julia-xyz.scm (julia-preferences): Update to 1.4.3.

Change-Id: Ia8ddaf611a7845879481ca6b2b30ec416f73c2c5
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index be2501a934..0a908ae1ef 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -5007,7 +5007,7 @@ (define-public julia-positivefactorizations
 (define-public julia-preferences
   (package
     (name "julia-preferences")
-    (version "1.2.2")
+    (version "1.4.3")
     (source
       (origin
         (method git-fetch)
@@ -5016,7 +5016,7 @@ (define-public julia-preferences
                (commit (string-append "v" version))))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "1cail43iqzbi6m9v6981rhz47zf2lcvhs5ds5gdqvc9nx5frghxq"))))
+         (base32 "09q5d223ad37qp6vqjm46la9vf8skj30z1ri3qmadq6vdycav7xm"))))
     (build-system julia-build-system)
     (arguments
      (list #:tests? #f))        ; Tests try to mkdir /.julia
-- 
2.46.0

[bug#75015] [PATCH 02/38] gnu: julia-dataapi: Update to 1.16.0.

[Sharlatan Hellseher]

* gnu/packages/julia-xyz.scm (julia-dataapi): Update to 1.16.0.

Change-Id: I96f00b74ef954d3ee7f41e571ceb5adc50e0acbf
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 0a908ae1ef..c66fa2bc92 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -1498,7 +1498,7 @@ (define-public julia-csv
 (define-public julia-dataapi
   (package
     (name "julia-dataapi")
-    (version "1.13.0")
+    (version "1.16.0")
     (source
       (origin
         (method git-fetch)
@@ -1507,7 +1507,7 @@ (define-public julia-dataapi
                (commit (string-append "v" version))))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "1x5pdpjlbk29766ark7rmzjbl0rhxmsb1cp04lc891aknh30rn3i"))))
+         (base32 "1n3i5ajm7a955nggba8k15m9i0ybiq42v6drn5dqb57lj6sylbbz"))))
     (build-system julia-build-system)
     (home-page "https://github.com/JuliaData/DataAPI.jl")
     (synopsis "Data-focused namespace for packages to share functions")
-- 
2.46.0

[bug#75015] [PATCH 03/38] gnu: Add julia-precompiletools.

[Sharlatan Hellseher]

* gnu/packages/julia-xyz.scm (julia-precompiletools): New variable.

Change-Id: Ic3e3be424a72e296a3653dac1516241d2c8d48f3
---
 gnu/packages/julia-xyz.scm | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index c66fa2bc92..35bb76411f 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -5004,6 +5004,38 @@ (define-public julia-positivefactorizations
 definite.")
     (license license:expat)))
 
+(define-public julia-precompiletools
+  (package
+    (name "julia-precompiletools")
+    (version "1.2.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/JuliaLang/PrecompileTools.jl")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "07b69gmgs3zxs86l9g9dymv3sfgncm8sl86sp0ck6xf5ly10phiy"))))
+    (build-system julia-build-system)
+    (arguments
+     (list
+      ;; Tets fail with error: caused by: GitError(Code:ERROR, Class:SSL,
+      ;; OpenSSL error: failed to load certificates: error:80000002:system
+      ;; library::No such file or directory).
+      #:tests? #f))
+    (propagated-inputs
+     (list julia-preferences))
+    (home-page "https://github.com/JuliaLang/PrecompileTools.jl")
+    (synopsis "Reduce time-to-first-execution of Julia code")
+    (description
+     "@code{PrecompileTools} is designed to help reduce delay on first usage
+of Julia code.  It can force precompilation of specific workloads;
+particularly with Julia 1.9 and higher, the precompiled code is automatically
+saved to disk, so that it doesn't need to be compiled freshly in each Julia
+session.")
+    (license license:expat)))
+
 (define-public julia-preferences
   (package
     (name "julia-preferences")
-- 
2.46.0

[bug#75015] [PATCH 04/38] gnu: Add julia-interfaces.

[Sharlatan Hellseher]

* gnu/packages/julia-xyz.scm (julia-interfaces): New variable.

Change-Id: Ia0dc3903460f4fa87a0649e404dacea33c0f8f04
---
 gnu/packages/julia-xyz.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 35bb76411f..0d6bc22b5c 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -3412,6 +3412,31 @@ (define-public julia-inlinestrings
 255 bytes.")
     (license license:expat)))
 
+(define-public julia-interfaces
+  (package
+    (name "julia-interfaces")
+    (version "0.3.2")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/rafaqz/Interfaces.jl")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1g765wzqc16pxrr3kqcbq0b2n1w51mwaxffrv4yjn1mvr607y6xf"))))
+    (build-system julia-build-system)
+    (native-inputs
+     (list julia-aqua))
+    (propagated-inputs
+     (list julia-documenter))
+    (home-page "https://github.com/rafaqz/Interfaces.jl")
+    (synopsis "Macros to define and implement interfaces")
+    (description
+     "This package provides macros for defining the required behaviours of
+Julia interfaces, and stating that an object implements them.")
+    (license license:expat)))
+
 (define-public julia-interpolations
   (package
     (name "julia-interpolations")
-- 
2.46.0

[bug#75015] [PATCH 05/38] gnu: Add julia-extents.

[Sharlatan Hellseher]

* gnu/packages/julia-xyz.scm (julia-extents): New variable.

Change-Id: Ia75a16fc1ba50c7e12eec74bcd5e3f8c9dc1d92e
---
 gnu/packages/julia-xyz.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 0d6bc22b5c..3af2932391 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2176,6 +2176,29 @@ (define-public julia-exprtools
 performant tooling without requiring additional package dependencies.")
     (license license:expat)))
 
+(define-public julia-extents
+  (package
+    (name "julia-extents")
+    (version "0.1.4")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/rafaqz/Extents.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "0l3f7fv13npd71rhjwb49j2f2aq3az6lyls85bbxxfh3pw51yr78"))))
+    (build-system julia-build-system)
+    (home-page "https://github.com/rafaqz/Extents.jl")
+    (synopsis "Shared Extent object for Julia spatial data")
+    (description
+     "Extents.jl is a small package that defines an @code{Extent} object that
+can be used by the different Julia spatial data packages.  @code{Extent} is a
+wrapper for a NamedTuple of tuples holding the lower and upper bounds for each
+dimension of a object.")
+    (license license:expat)))
+
 (define-public julia-ffmpeg
   (package
     (name "julia-ffmpeg")
-- 
2.46.0

[bug#75015] [PATCH 06/38] gnu: Add julia-commonsolve.

[Sharlatan Hellseher]

* gnu/packages/julia-xyz.scm (julia-commonsolve): New variable.

Change-Id: If73125bcfe53b26c818fedd14bd8ddbbb863e887
---
 gnu/packages/julia-xyz.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 3af2932391..5097770159 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -1240,6 +1240,29 @@ (define-public julia-combinatorics
 focusing mostly (as of now) on enumerative combinatorics and permutations.")
     (license license:expat)))
 
+(define-public julia-commonsolve
+  (package
+    (name "julia-commonsolve")
+    (version "0.2.4")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/SciML/CommonSolve.jl")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1w05fp02g5cmqzqp96hcpriwjpqx61sl481rj92gf4y4xpinmdf5"))))
+    (build-system julia-build-system)
+    (home-page "https://docs.sciml.ai/CommonSolve/stable")
+    (synopsis "Common solve function for scientific machine learning")
+    (description
+     "CommonSolve.jl provides @code{solve}, @code{init}, @code{solve!}, and
+@code{step!} commands.  By using the same definition, solver libraries from
+other completely different ecosystems can extend the functions and thus not
+clash with SciML if both ecosystems export the solve command.")
+    (license license:expat)))
+
 (define-public julia-commonsubexpressions
   (package
     (name "julia-commonsubexpressions")
-- 
2.46.0

[bug#75015] [PATCH 07/38] gnu: Add julia-compositionsbase.

[Sharlatan Hellseher]

* gnu/packages/julia-xyz.scm (julia-compositionsbase): New variable.

Change-Id: I154e3a036607ef97377c93ca0a95a17adbd29db6
---
 gnu/packages/julia-xyz.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 5097770159..e312efae80 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -1315,6 +1315,29 @@ (define-public julia-compat
 way.")
     (license license:expat)))
 
+(define-public julia-compositionsbase
+  (package
+    (name "julia-compositionsbase")
+    (version "0.1.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/JuliaFunctional/CompositionsBase.jl")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "11cfmc0rv0i8j6l7v59k4b367xx006nsxy9lkmqlzikc679zzzwa"))))
+    (build-system julia-build-system)
+    (native-inputs
+     (list julia-documenter))
+    (home-page "https://github.com/JuliaFunctional/CompositionsBase.jl")
+    (synopsis "Composition of morphisms")
+    (description
+     "CompositionsBase.jl exports @code{∘}, @code{⨟} operators and also the
+ASCII aliases, @code{compose}, and @code{opcompose}.")
+    (license license:expat)))
+
 (define-public julia-configurations
   (package
     (name "julia-configurations")
-- 
2.46.0

[bug#75015] [PATCH 08/38] gnu: Add julia-staticnumbers.

[Sharlatan Hellseher]

* gnu/packages/julia-xyz.scm (julia-staticnumbers): New variable.

Change-Id: I02581843d1f851c82c99f0302f0c5381e5c7d8be
---
 gnu/packages/julia-xyz.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index e312efae80..8c57bc5153 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -6318,6 +6318,30 @@ (define-public julia-staticarrayscore
 depending on the entirety of @code{StaticArrays.jl}.")
     (license license:expat)))
 
+(define-public julia-staticnumbers
+  (package
+    (name "julia-staticnumbers")
+    (version "0.4.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/perrutquist/StaticNumbers.jl")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1m6drdyxgizc6d5qak9l6c2dv8nb6x5kj7sgfxkgwnfxf6ran257"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     (list julia-simd
+           julia-staticarrays))
+    (home-page "https://github.com/perrutquist/StaticNumbers.jl")
+    (synopsis "Static numbers in Julia")
+    (description
+     "This package provides number datatypes which store their values in type
+parameters, making them runtime constants.")
+    (license license:expat)))
+
 (define-public julia-statisticaltraits
   (package
     (name "julia-statisticaltraits")
-- 
2.46.0

[bug#75015] [PATCH 09/38] gnu: Add julia-performancetesttools.

[Sharlatan Hellseher]

* gnu/packages/julia-xyz.scm (julia-performancetesttools): New variable.

Change-Id: I4ac35d63a37cef15f8a19f1c86fe23a0ce3d4b77
---
 gnu/packages/julia-xyz.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 8c57bc5153..c41b13c901 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -4965,6 +4965,28 @@ (define-public julia-parsers
 utilities for Julia.")
     (license license:expat)))
 
+(define-public julia-performancetesttools
+  (package
+    (name "julia-performancetesttools")
+    (version "0.1.3")
+    (source
+      (origin
+        (method git-fetch)
+        (uri (git-reference
+               (url "https://github.com/JuliaTesting/PerformanceTestTools.jl")
+               (commit (string-append "v" version))))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "0v5b8vnnhavra18h0136gahiyl7nc6r3rm3hm359ic3da8yzrnhn"))))
+    (build-system julia-build-system)
+    (home-page "https://github.com/JuliaTesting/PerformanceTestTools.jl")
+    (synopsis "Run script in a separate Julia process")
+    (description
+     "This package provides a functionality to run tests in a separate Julia
+process without @code{--check-bounds=yes} and @code{--code-coverage=user}
+flags.")
+    (license license:expat)))
+
 (define-public julia-pdmats
   (package
     (name "julia-pdmats")
-- 
2.46.0

[bug#75015] [PATCH 10/38] gnu: calceph: Update to 4.0.3.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (calceph): Update to 4.0.3.

Change-Id: If55f18abb989a2181c8b753bf676935da57b49bb
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index e31ac574d8..00a1cc4b82 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -261,7 +261,7 @@ (define-public aoflagger
 (define-public calceph
   (package
     (name "calceph")
-    (version  "4.0.1")
+    (version  "4.0.3")
     (source
      (origin
        (method git-fetch)
@@ -270,7 +270,7 @@ (define-public calceph
              (commit (string-append name "_"
                                     (string-replace-substring version "." "_")))))
        (sha256
-        (base32 "00q7iww72g6rgnq2br0g2py0ll57690gid08vyva6ffswyb3g923"))
+        (base32 "1985ihkpxr0vra5xr664yxg9llby88j3zkbhqn38lh8wn0gwivj9"))
        (file-name (git-file-name name version))))
     (build-system cmake-build-system)
     (native-inputs
-- 
2.46.0

[bug#75015] [PATCH 11/38] gnu: healpix: Update to 3.8.3.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (healpix, healpix-cxx): Update to 3.8.3.

Change-Id: If6feac33390a92a26fae9ee07fd8aac7894d6f5e
---
 gnu/packages/astronomy.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 00a1cc4b82..8c5eddf8ae 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -821,18 +821,18 @@ (define* (healpix-source #:key version sha256-base32-hash)
                (version-list (string-split version #\.))
                (name+version (format #f "~a_~{~a.~a~a~}" name version-list)))
           (string-append "mirror://sourceforge/healpix/"
-                         name+version "/" name+version "_" "2022Jul28.tar.gz")))
+                         name+version "/" name+version "_" "2024Nov13.tar.gz")))
        (sha256
         (base32 sha256-base32-hash ))))
 
 (define-public healpix
   (package
     (name "healpix")
-    (version "3.8.2")
+    (version "3.8.3")
     (source
      (healpix-source
       #:version version
-      #:sha256-base32-hash "09x1lafq01gzk16yvmz2pdhrxnqfjp3b2p9hlgy0dbrdg82ryqj7"))
+      #:sha256-base32-hash "1nhxad4zbk6qm6zblvyvyaavfq7vy8asq150n83dfvsrzj7c2xl8"))
     (build-system gnu-build-system)
     (arguments
      (list
-- 
2.46.0

[bug#75015] [PATCH 12/38] gnu: indi-2.0: Update to 2.1.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (indi-2.0): Update to 2.1.1.

Change-Id: I6996fb8ed1a0fe80dddb4cb92ac39ff253e934d5
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 8c5eddf8ae..6274c7d0d0 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -946,7 +946,7 @@ (define-public imppg
 (define-public indi-2.0
   (package
     (name "indi")
-    (version "2.1.0")
+    (version "2.1.1")
     (source
      (origin
        (method git-fetch)
@@ -955,7 +955,7 @@ (define-public indi-2.0
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "18i70m0qw59bsb46ffqb1kkigfb2m8ahbh825rxc2h86aqnrc6l6"))))
+        (base32 "1mkcql7hsc6qirpmwmfsz9j0bl9msi11d8p87hc840w1ximmglab"))))
     (build-system cmake-build-system)
     (arguments
      (list
-- 
2.46.0

[bug#75015] [PATCH 13/38] gnu: splash: Update to 3.11.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (splash): Update to 3.11.1.

Change-Id: If1f76fb40f4912fa667d8c17b0c247a900d413bf
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 6274c7d0d0..6d4dfb4566 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6944,7 +6944,7 @@ (define-public skymaker
 (define-public splash
   (package
     (name "splash")
-    (version "3.10.3")
+    (version "3.11.1")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -6952,7 +6952,7 @@ (define-public splash
                     (commit (string-append "v" version))))
               (sha256
                (base32
-                "077s9if7fmccvhsbp0dhvyqcil46vpbgdm1y6qn6h34r8lfqj9z6"))
+                "133ihsxirik7iivi1hia6wwfvilwqhw19v5mmajs36zcj914qhyc"))
               (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments
-- 
2.46.0

[bug#75015] [PATCH 14/38] gnu: wcslib: Update to 8.4.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (wcslib): Update to 8.4.
[source]<uri>: Fix it as changed upstream.
[home-page]: Likewise.

Change-Id: Ie527d9669af5a41d1f9a186464c04ea0e3991ff1
---
 gnu/packages/astronomy.scm | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 6d4dfb4566..4fdbf1742f 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -7202,14 +7202,14 @@ (define-public unsio
 (define-public wcslib
   (package
     (name "wcslib")
-    (version "8.3")
+    (version "8.4")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "https://www.atnf.csiro.au/people/mcalabre/WCS/"
+       (uri (string-append "https://www.atnf.csiro.au/people/mcalabre/WCS/WCS/"
                            "wcslib-" version ".tar.bz2"))
        (sha256
-        (base32 "0225c77jypjjlfw6zd53447qnrmlq1fl38xzi4mw1fr7g50s67j3"))
+        (base32 "1p1606jscky6cw32qwx7k7nwv24jm9c85mzfrm9qnjni4r2882wn"))
        (snippet
         #~(begin (use-modules (guix build utils))
                  (delete-file-recursively "C/flexed")))))
@@ -7234,7 +7234,7 @@ (define-public wcslib
      (list cfitsio))
     (native-inputs
      (list flex))
-    (home-page "https://www.atnf.csiro.au/people/mcalabre/WCS")
+    (home-page "https://www.atnf.csiro.au/people/mcalabre/WCS/WCS")
     (synopsis "Library which implements the FITS WCS standard")
     (description "The FITS \"World Coordinate System\" (@dfn{WCS}) standard
 defines keywords and usage that provide for the description of astronomical
-- 
2.46.0

[bug#75015] [PATCH 15/38] gnu: python-astropy: Update to 6.1.7.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-astropy): Update to 6.1.7.

Change-Id: I10eb5927df83392552535f00dcfb649e43d9129c
---
 gnu/packages/astronomy.scm | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4fdbf1742f..93ca3b925e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3260,16 +3260,20 @@ (define-public stackistry
 deconvolution).  Such post-processing is not performed by Stackistry.")
     (license license:gpl3+)))
 
+;; XXX: Upgrading to the latest version requires Python3.11+ and fresh
+;; versions of numpy, PyYAML, packaging, Pandas and matplotlib, see
+;; <https://github.com/astropy/astropy/blob/v7.0.0/CHANGES.rst
+;; #other-changes-and-additions>.
 (define-public python-astropy
   (package
     (name "python-astropy")
-    (version "6.1.6")
+    (version "6.1.7")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "astropy" version))
        (sha256
-        (base32 "0iv8mkdflfprigv3g6666v80nvg6blwz0989hqw232g7gms57qb3"))
+        (base32 "1vspagb4vbmkl6fm3mr78577dgdq992ggwkd5qawpdh6cccaq1d4"))
        (modules '((guix build utils)))
        (snippet
         '(begin
-- 
2.46.0

[bug#75015] [PATCH 16/38] gnu: python-asdf-standard: Adjust native inputs.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-asdf-standard) [native-inputs]:
Remove python-astropy; add python-astropy-minimal.

Change-Id: I7eac445679adbccc2d31ff6fe39807d3bfa1bf6d
---
 gnu/packages/astronomy.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 93ca3b925e..a6f363772f 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5933,7 +5933,7 @@ (define-public python-asdf-standard
               "--ignore=tests/test_manifests.py"
               "--ignore=tests/test_yaml_schema.py")))
     (native-inputs
-     (list python-astropy
+     (list python-astropy-minimal
            python-jsonschema
            python-pypa-build
            python-pytest
-- 
2.46.0

[bug#75015] [PATCH 17/38] gnu: python-asdf: Update to 4.0.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-asdf): Update to 4.0.0.
[propagated-inputs]: Add python-packaging.
[native-inputs]: Remove python-packaging.

Change-Id: I8a26d7e47c401a14c612450e4d3dd68d17f64e7e
---
 gnu/packages/astronomy.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a6f363772f..8254c035cd 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1601,13 +1601,13 @@ (define-public python-aplpy
 (define-public python-asdf
   (package
     (name "python-asdf")
-    (version "3.3.0")
+    (version "4.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "asdf" version))
        (sha256
-        (base32 "0pwy8p3idz40a1z07d0lvvd0mwwya8g52wrp72frgpagjkvj3ska"))))
+        (base32 "1nzrgsyidcynhgiqxy7pwny07prza1g6b7hs17ybg6fh9zas6kc6"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -1623,7 +1623,6 @@ (define-public python-asdf
                 (("version_file = \"asdf/_version.py\"") "")))))))
     (native-inputs
      (list python-fsspec
-           python-packaging
            python-psutil
            python-pytest
            python-pytest-doctestplus
@@ -1639,6 +1638,7 @@ (define-public python-asdf
            python-jmespath
            python-lz4
            python-numpy
+           python-packaging
            python-pyyaml
            python-semantic-version))
     (home-page "https://github.com/asdf-format/asdf")
-- 
2.46.0

[bug#75015] [PATCH 18/38] gnu: python-bayesicfitting: Update to 3.2.3.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-bayesicfitting): Update to 3.2.3.

Change-Id: I38431a8500d576d42eaf20f119695c4f1dd71bbc
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 8254c035cd..8537bdb0dd 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1904,7 +1904,7 @@ (define-public python-astroml
 (define-public python-bayesicfitting
   (package
     (name "python-bayesicfitting")
-    (version "3.2.2")
+    (version "3.2.3")
     (source
      (origin
        (method git-fetch)
@@ -1913,7 +1913,7 @@ (define-public python-bayesicfitting
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "15zl6r5agfc07lnkrr4qwzx0naql0jblh96j095jyqywd2qnhfsb"))))
+        (base32 "0q7s7glf4b46vln67x7ggbpkbi4anyh3f3ldwafc2hggsrmx683q"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.46.0

[bug#75015] [PATCH 19/38] gnu: python-ci-watson: Update to 0.8.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-ci-watson): Update to 0.8.0.
[propagated-inputs]: Add python-readchar.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ic395b2d2251432ec0991bced9f2df85fa528c684
---
 gnu/packages/astronomy.scm | 11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 8537bdb0dd..18894529c2 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3696,13 +3696,13 @@ (define-public python-cdflib
 (define-public python-ci-watson
   (package
     (name "python-ci-watson")
-    (version "0.7.0")
+    (version "0.8.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "ci_watson" version))
        (sha256
-        (base32 "1qb5iyb053k1711ic93rcm0z344dc6h8vg8fpkbqpg5z6q0v2b0y"))))
+        (base32 "1rlhs8y0splmzr76z1s35zl68qm748nlayha8m81b0zhkhicxvhg"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -3714,12 +3714,15 @@ (define-public python-ci-watson
                 ;; ImportError: Error importing plugin " no:legacypath": No
                 ;; module named ' no:legacypath'
                 (("-p no:legacypath") "")))))))
+    (native-inputs
+     (list python-pytest-astropy-header
+           python-setuptools
+           python-wheel))
     (propagated-inputs
      (list python-crds
            python-pytest
+           python-readchar
            python-requests))
-    (native-inputs
-     (list python-pytest-astropy-header))
     (home-page "https://github.com/spacetelescope/ci_watson")
     (synopsis "Helper functions for STScI software")
     (description
-- 
2.46.0

[bug#75015] [PATCH 20/38] gnu: python-cmyt: Update to 2.0.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-cmyt): Update to 2.0.1.
[source]: Swap to git checkout containing tests.
[arguments]<phases>: Add 'relax-requirements.
[native-inputs]: Remove python-setuptools and python-wheel; add
python-hatchling.
[description]: Adjust fill column.

Change-Id: I5eb5cf848c26e3fb9f16f7d611d06047387981e7
---
 gnu/packages/astronomy.scm | 27 +++++++++++++++++++--------
 1 file changed, 19 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 18894529c2..7e9b3e72d4 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3732,28 +3732,39 @@ (define-public python-ci-watson
 (define-public python-cmyt
   (package
     (name "python-cmyt")
-    (version "2.0.0")
+    (version "2.0.1")
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "cmyt" version))
+       (method git-fetch) ; no tests in the PyPI tarball
+       (uri (git-reference
+             (url "https://github.com/yt-project/cmyt")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "1zabmckr1z637pfqqvlkj0asfqqvx2x92163dby8x0c8yiqgdvjb"))))
+        (base32 "0d1szsgjd09ya53vx7g5ryz2jdxl19p9rvrm4xz8v53vbqrp18cv"))))
     (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'relax-requirements
+            (lambda _
+              (substitute* "pyproject.toml"
+                ;; numpy>=1.26
+                ((">=1.26") ">=1.23")))))))
     (native-inputs
      (list python-colorspacious
            python-pytest
            python-pytest-mpl
-           python-setuptools
-           python-wheel))
+           python-hatchling))
     (propagated-inputs
      (list python-matplotlib
            python-numpy))
     (home-page "https://yt-project.org/")
     (synopsis "Matplotlib colormaps from the yt project")
     (description
-     "This package provides a range of colormaps designed for scientific
-use with Matplotlib.  It includes perceptually uniform sequential colormaps such
+     "This package provides a range of colormaps designed for scientific use
+with Matplotlib.  It includes perceptually uniform sequential colormaps such
 as @code{abre}, @code{dusk}, @code{kepl}, and @code{octarine}, as well as
 monochromatic sequential colormaps like @code{blue}, @code{green}, and
 @code{red}, and others (@code{algae}, @code{pastel}, and @code{xray}).")
-- 
2.46.0

[bug#75015] [PATCH 21/38] gnu: python-crds: Update to 12.0.8.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-crds): Update to 12.0.8.

Change-Id: I5310effbc10a4bbc1b4efaa6eb417bee7a0ad6de
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 7e9b3e72d4..71971aea90 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3773,13 +3773,13 @@ (define-public python-cmyt
 (define-public python-crds
   (package
     (name "python-crds")
-    (version "12.0.6")
+    (version "12.0.8")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "crds" version))
        (sha256
-        (base32 "1jm85myp61dckr85rfax32z4cvp4nrdz235486jp225kf765fzdx"))))
+        (base32 "09kdpaywj88n31jard4wbqmb9132qf6fk0ar2z6ca9vswavivfk8"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.46.0

[bug#75015] [PATCH 22/38] gnu: python-extinction: Update to 0.4.7.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-extinction): Update to 0.4.7.

Change-Id: If37e5335e5e7cd7dd8ed9b394108507b3b544f41
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 71971aea90..b9db39530b 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2184,7 +2184,7 @@ (define-public python-ephem
 (define-public python-extinction
   (package
     (name "python-extinction")
-    (version "0.4.6")
+    (version "0.4.7")
     (source
      (origin
        (method git-fetch) ; No tests in PyPI
@@ -2193,7 +2193,7 @@ (define-public python-extinction
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1adxq926jd469mxm6llvsljgf2jqb06905h61i9qzc7m2yrm4wga"))))
+        (base32 "04k9mfbijf2nwzhh9sxpkswxk7077d7gbc6nq4hjb51h8rslcjg2"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.46.0

[bug#75015] [PATCH 23/38] gnu: python-gwcs: Update to 0.22.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-gwcs): Update to 0.22.1.
[arguments] <phases>: Add 'relax-requirements.
[propagated-inputs]: Add python-asdf.
[native-inputs]: Remove python-asdf-3, python-jsonschema,
python-jmespath, and python-pytest-doctestplus; add
python-pytest-astropy.

(python-asdf-3): Delete variable.

Change-Id: I535176880f840ab60fe262324633226816c16be5

gnu: Remove python-asdf-3.

Change-Id: Id8422b905b5890dfbb27e9aeafd764092a6ab14e
---
 gnu/packages/astronomy.scm | 19 +++++++++++++------
 1 file changed, 13 insertions(+), 6 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index b9db39530b..caaf3c59d6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2521,19 +2521,26 @@ (define-public python-glue-qt
 (define-public python-gwcs
   (package
     (name "python-gwcs")
-    (version "0.21.0")
+    (version "0.22.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "gwcs" version))
        (sha256
-        (base32 "1fn5l4v236bl7xqi1is40c2q57dji8by98iwqcndfnmjwqf7zllc"))))
+        (base32 "0lvab51ryfb4sjsnckmap7idh29as2mjngkyin4ngfy7hdzknvg9"))))
     (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+         (add-after 'unpack 'relax-requirements
+           (lambda _
+             (substitute* "pyproject.toml"
+               ;; scipy>=1.14.1
+               ((">=1.14.1") ">=1.12.0")))))))
     (native-inputs
-     (list python-jsonschema
-           python-jmespath
-           python-pytest
-           python-pytest-doctestplus
+     (list python-pytest
+           python-pytest-astropy
            python-pyyaml
            python-setuptools-scm))
     (propagated-inputs
-- 
2.46.0

[bug#75015] [PATCH 24/38] gnu: python-halotools: Update to 0.9.2.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-halotools): Update to 0.9.2.

Change-Id: I21505a54c2537977fc5346f21ef626b0699b7891
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index caaf3c59d6..4bb6bc2816 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2565,13 +2565,13 @@ (define-public python-gwcs
 (define-public python-halotools
   (package
     (name "python-halotools")
-    (version "0.9.1")
+    (version "0.9.2")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "halotools" version))
        (sha256
-        (base32 "1fn74ljb4yv3nprgzaf9awiyjdvkmzf1a1n2kvajbax835qcs3bz"))))
+        (base32 "1fa4w8dabr0zx6xwnrdwdipf4s6sg7q25jmq42n9q8n64kjx60vb"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.46.0

[bug#75015] [PATCH 25/38] gnu: python-healpy: Update to 1.18.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-healpy): Update to 1.18.0.
[arguments] <phases>: Remove 'build-extensions, add 'pre-check and
delete conftest.py causing tests to fail.

Change-Id: I1293ed04b578f0525d9f862c049bc76038583184
---
 gnu/packages/astronomy.scm | 10 ++++------
 1 file changed, 4 insertions(+), 6 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4bb6bc2816..344a136c3e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2647,16 +2647,13 @@ (define-public python-hasasia
 (define-public python-healpy
   (package
     (name "python-healpy")
-    ;; The latest version depends on custom fork of HEALPix with changes not
-    ;; ported to upstream yet, see
-    ;; <https://github.com/healpy/healpy/issues/949>.
-    (version "1.16.6")
+    (version "1.18.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "healpy" version))
        (sha256
-        (base32 "1w99cgszh2mzcn5x8p0gdzn3r96vyfdnvbwm20a1l9fdiy16xcha"))))
+        (base32 "12ajn55kjgnqadyamh6cw4q8i01nyv6isgf47lcnv2jch27zs4ka"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -2673,8 +2670,9 @@ (define-public python-healpy
             (lambda _
             (substitute* "pyproject.toml"
               (("--doctest-plus") ""))))
-          (add-before 'check 'build-extensions
+          (add-before 'check 'pre-check
             (lambda _
+              (delete-file "lib/healpy/conftest.py")
               (invoke "python" "setup.py" "build_ext" "--inplace"))))))
     (native-inputs
      (list nss-certs-for-test
-- 
2.46.0

[bug#75015] [PATCH 26/38] gnu: python-pysiaf: Update to 0.24.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-pysiaf): Update to 0.24.1.

Change-Id: I66a429cbfba94cab1b49e5df52fb200c094aa471
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 344a136c3e..5858f9fd51 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5625,13 +5625,13 @@ (define-public python-pyregion
 (define-public python-pysiaf
   (package
     (name "python-pysiaf")
-    (version "0.23.3")
+    (version "0.24.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pysiaf" version))
        (sha256
-        (base32 "16qbg5n2bw2wr3i8a040i7z7az3w0pn508y6xggy05viwdli6br8"))))
+        (base32 "0jgs50jmisv7b7am677q2c3kqjk0fch8gpvijzhdllhkav9wdhs0"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.46.0

[bug#75015] [PATCH 27/38] gnu: python-spisea: Update to 2.1.13.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-spisea): Update to 2.1.13.

Change-Id: Ide2a1b88cc39b4f207b0e51e76acf85493485220
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 5858f9fd51..94d1065297 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5037,7 +5037,7 @@ (define-public python-spherical-geometry
 (define-public python-spisea
   (package
     (name "python-spisea")
-    (version "2.1.11")
+    (version "2.1.13")
     (source
      (origin
        (method git-fetch)
@@ -5046,7 +5046,7 @@ (define-public python-spisea
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1xgmbg1c0lijvbsfiicjl2r4y7prm47qnmj86w69wa8xxsz7n2ph"))))
+        (base32 "1i25csfcism3b5v74kqp0a3i44qkhwkh61ag65l69krm5w3yvygv"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.46.0

[bug#75015] [PATCH 28/38] gnu: python-sunpy: Update to 6.0.4.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-sunpy): Update to 6.0.4.

Change-Id: Ib0b6ae82fb2b4ff7882c1c4aa25d15d16ec8a77d
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 94d1065297..be821da1d0 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4738,13 +4738,13 @@ (define-public python-sgp4
 (define-public python-sunpy
   (package
     (name "python-sunpy")
-    (version "6.0.3")
+    (version "6.0.4")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "sunpy" version))
        (sha256
-        (base32 "1v3bnl9dhs9ks7jhmwy10qq6a99v2xcpalmigb255fxi9pqcy8lj"))))
+        (base32 "1x659wal84m00czkjjkvkawxivgc5d43m71m3q817zmpjkin7bma"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.46.0

[bug#75015] [PATCH 29/38] gnu: webbpsf-data: Update to 1.5.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (webbpsf-data): Update to 1.5.0.

Change-Id: If9a456c292dde91d61ef399230c042a2b0924ae2
---
 gnu/packages/astronomy.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index be821da1d0..ca503585e0 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -7319,15 +7319,15 @@ (define-public wcstools
 (define-public webbpsf-data
   (package
     (name "webbpsf-data")
-    (version "1.4.0")
+    (version "1.5.0")
     (source
      (origin
        (method url-fetch)
-       ;; 70.1MiB archive
+       ;; 73.9MiB archive
        (uri "https://stsci.box.com/shared/static/qxpiaxsjwo15ml6m4pkhtk36c9jgj70k.gz")
        (file-name (string-append "webbpsf-data-" version ".tar.gz"))
        (sha256
-        (base32 "0b3qxp6mrm2dwsdnqnprf4yrp0zbncknildqmf28wgginwa5sch8"))))
+        (base32 "0lnzjvn9276v00p5g4894jgdb9mw4mr89q64l7ywikz9khk3j5gc"))))
     (build-system copy-build-system)
     (arguments
      (list
-- 
2.46.0

[bug#75015] [PATCH 30/38] gnu: python-webbpsf: Update to 1.5.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-webbpsf): Update to 1.5.0.
[arguments]<test-flags>: Enable 2 tests after NumPy has been
updated. Skip one more test requiring network access.

Change-Id: I54fb11fdbbb1c19bed39e00a9c1036ed09e03387
---
 gnu/packages/astronomy.scm | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index ca503585e0..27224c70d9 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6440,26 +6440,26 @@ (define-public python-viresclient
 (define-public python-webbpsf
   (package
     (name "python-webbpsf")
-    (version "1.4.0")
+    (version "1.5.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "webbpsf" version))
        (sha256
-        (base32 "1084vbk2q3kybxgvh8f2zbsi2w2z8zapsfjkgd6km4yhwqv1wl4a"))))
+        (base32 "0aad817lh2llld9wmb4mvdnncz916niw2apnhip8gc78fi1imfri"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:test-flags
       #~(list "--numprocesses" (number->string (parallel-job-count))
-              "-k" (string-append
-                    ;; Test requiring network access
-                    "not test_monthly_trending_plot_auto_opdtable"
-                    " and not test_monthly_trending_plot_opdtable_param"
-                    " and not test_delta_wfe_around_time"
-                    ;; Newer NumPy is required
-                    " and not test_nircam_errors"
-                    " and not test_all_detectors"))
+              "-k"
+              ;; Tests requiring network access.
+              (string-join
+               (list "not test_delta_wfe_around_time"
+                     "test_get_webbpsf_data_path_invalid"
+                     "test_monthly_trending_plot_auto_opdtable"
+                     "test_monthly_trending_plot_opdtable_param")
+               " and not "))
       #:phases
       #~(modify-phases %standard-phases
           (add-before 'check 'set-env
-- 
2.46.0

[bug#75015] [PATCH 31/38] gnu: python-stsci-stimage: Adjust inputs.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-stsci-stimage):
[native-inputs]: Add python-setuptools. Sort alphabetically.

Change-Id: I75fe8eb911b13a83bbe096aec665a33fde05cfdf
---
 gnu/packages/astronomy.scm | 11 +++++------
 1 file changed, 5 insertions(+), 6 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 27224c70d9..c42c48f272 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5199,8 +5199,6 @@ (define-public python-stsci-imagestats
 (define-public python-stsci-stimage
   (package
     (name "python-stsci-stimage")
-    ;; PyPI version was 0.2.8 but the latest version tag on GiHub was 0.2.7,
-    ;; see <https://github.com/spacetelescope/stsci.stimage/issues/38>
     (version "0.2.9")
     (source (origin
               (method url-fetch)
@@ -5223,13 +5221,14 @@ (define-public python-stsci-stimage
                           #$(this-package-native-input "python-waf") "/bin/waf")
                          "waf")
               (invoke "python" "waf" "configure" "build"))))))
-    (propagated-inputs
-     (list python-numpy))
     (native-inputs
      (list python-pytest
-           python-wheel
+           python-setuptools
            python-setuptools-scm
-           python-waf))
+           python-waf
+           python-wheel))
+    (propagated-inputs
+     (list python-numpy))
     (home-page "https://stscistimage.readthedocs.io/en/latest/")
     (synopsis "STScI image processing")
     (description
-- 
2.46.0

[bug#75015] [PATCH 32/38] gnu: Add python-asdf-3.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-asdf-3): New variable.

Change-Id: I1dda9cb5590a9be34b860b4c900af5bc5101dab6
---
 gnu/packages/astronomy.scm | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index c42c48f272..73a4434c01 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1649,6 +1649,17 @@ (define-public python-asdf
 implementation of the ASDF Standard.")
     (license license:bsd-3)))
 
+(define-public python-asdf-3
+  (package
+    (inherit python-asdf)
+    (version "3.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "asdf" version))
+       (sha256
+        (base32 "0scnw5y4x5k3vyfylq0w612b662xlccx3gsscaw082zlv2yxfyh4"))))))
+
 (define-public python-asdf-astropy
   (package
     (name "python-asdf-astropy")
-- 
2.46.0

[bug#75015] [PATCH 33/38] gnu: python-rad: Adjust input.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-rad) [propagated-inputs]: Remove
python-asdf; add python-asdf-3.

Change-Id: I2a91d8cf2913177b50f553a7c5902a779081a92e
---
 gnu/packages/astronomy.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 73a4434c01..34b5b7acca 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6193,7 +6193,7 @@ (define-public python-rad
            python-setuptools-scm
            python-wheel))
     (propagated-inputs
-     (list python-asdf
+     (list python-asdf-3
            python-asdf-astropy))
     (home-page "https://github.com/spacetelescope/rad")
     (synopsis "Roman Attribute Dictionary")
-- 
2.46.0

[bug#75015] [PATCH 34/38] gnu: python-roman-datamodels: Adjust input.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-roman-datamodels)
[propagated-inputs]: Remove python-asdf; add python-asdf-3.

Change-Id: I19ec90d9b416b5eaedcd6ec3a415b0525f0a180c
---
 gnu/packages/astronomy.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 34b5b7acca..e368ce57d4 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6316,7 +6316,7 @@ (define-public python-roman-datamodels
            python-setuptools-scm
            python-wheel))
     (propagated-inputs
-     (list python-asdf
+     (list python-asdf-3
            python-asdf-astropy
            python-astropy
            python-gwcs
-- 
2.46.0

[bug#75015] [PATCH 35/38] gnu: python-specutils: Fix build.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-specutils):
[arguments] <test-flags>: Skip one more test.
<phases>: Remove 'relax-requirements.

Change-Id: Iba3837d8d87ece1e97f954ffb20afdbfd6e05654
---
 gnu/packages/astronomy.scm | 24 +++++++++++++-----------
 1 file changed, 13 insertions(+), 11 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index e368ce57d4..d180ea4451 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4950,25 +4950,27 @@ (define-public python-specutils
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; Disabling test requiring access to download
-      ;; <https://datacenter.iers.org/data/9/finals2000A.all>.
-      ;; XXX: Check if test data may be packed as standalone package.
-      #:test-flags #~(list "-k" "not test_create_spectral_axis")
+      #:test-flags
+      #~(list "-k" (string-join
+                    (list
+                     ;; Disabling test requiring access to download
+                     ;; <https://datacenter.iers.org/data/9/finals2000A.all>.
+                     ;; XXX: Check if test data may be packed as standalone
+                     ;; package.
+                     "not test_create_spectral_axis"
+                     ;; ValueError: Expected the following order of world
+                     ;; arguments: SpectralCoord
+                     "test_wcs_transformations")
+                    " and not "))
       #:phases
       #~(modify-phases %standard-phases
-          (add-after 'unpack 'relax-requirements
-            (lambda _
-              (substitute* "setup.cfg"
-                ;; numpy>=1.24
-                (("1.24") "1.23.2"))))
           (add-before 'check 'set-home-env
             (lambda _
               ;; Tests require HOME to be set.
               ;;  Permission denied: '/homeless-shelter'
               (setenv "HOME" "/tmp"))))))
     (propagated-inputs
-     (list ;; python-stdatamodels ; cycle with python-synphot, optional.
-           python-asdf
+     (list python-asdf
            python-asdf-astropy
            python-astropy
            python-gwcs
-- 
2.46.0

[bug#75015] [PATCH 36/38] gnu: python-stdatamodels: Update to 2.2.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-stdatamodels): Update to 2.2.0.
[arguments] <test-flags>: Skip one more test.
[propagated-inputs]: Remove python-asdf and python-psutil; add python-asdf-3.
[native-inputs]: Add nss-certs-for-test and python-psutil.

Change-Id: I557491aa84854b17a73d23598edb384576aa3133
---
 gnu/packages/astronomy.scm | 15 ++++++++-------
 1 file changed, 8 insertions(+), 7 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index d180ea4451..4c5a3cfda0 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5319,13 +5319,13 @@ (define-public python-stcal
 (define-public python-stdatamodels
   (package
     (name "python-stdatamodels")
-    (version "2.1.2")
+    (version "2.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "stdatamodels" version))
        (sha256
-        (base32 "0x7fzkda9cr7bsf8hq2q090a73cxk3l3ynipq8lqixfp8c94m3kq"))))
+        (base32 "14720438p245ncjgwh7j37s69jd91rdk39daab8zswk9lhfbq9dx"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -5333,20 +5333,21 @@ (define-public python-stdatamodels
       #~(list "--numprocesses" (number->string (parallel-job-count))
               ;; Disable tests requiring access to CRDS servers to download
               ;; ~500MiB of data.
-              "-k" "not test_crds_selectors_vs_datamodel")
+              "-k" "not test_crds_selectors_vs_datamodel and not test_report")
       #:phases
       #~(modify-phases %standard-phases
           (add-before 'check 'set-home
             (lambda _
               (setenv "HOME" "/tmp"))))))
     (propagated-inputs
-     (list python-asdf
+     (list python-asdf-3
            python-asdf-astropy
            python-astropy
-           python-numpy
-           python-psutil))
+           python-numpy))
     (native-inputs
-     (list python-crds
+     (list nss-certs-for-test
+           python-crds
+           python-psutil
            python-pytest
            python-pytest-doctestplus
            python-pytest-xdist
-- 
2.46.0

[bug#75015] [PATCH 37/38] gnu: python-stpipe: Update to 0.8.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-stpipe): Update to 0.8.0.

Change-Id: I923db07707b4d40fc75209063064262cd236dc8c
---
 gnu/packages/astronomy.scm | 15 +++++++--------
 1 file changed, 7 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4c5a3cfda0..a0fb2cedf2 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5367,13 +5367,13 @@ (define-public python-stdatamodels
 (define-public python-stpipe
   (package
     (name "python-stpipe")
-    (version "0.7.0")
+    (version "0.8.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "stpipe" version))
        (sha256
-        (base32 "0kxm0vllyi3z149q3g3xpfl0c0wpviiyfh55rv0x6zvs0px6c81j"))
+        (base32 "1883gbn9dy3f53423rka55r828ml38dsqdamn2bgf2w5xf6cp7dg"))
        (modules '((guix build utils)))
        (snippet
         '(begin
@@ -5384,17 +5384,16 @@ (define-public python-stpipe
              (("from astropy.extern.configobj.configobj import ") "from configobj import ")
              (("from astropy.extern.configobj.validate import ") "from validate import "))))))
     (build-system pyproject-build-system)
+    (native-inputs
+     (list python-pytest
+           python-pytest-doctestplus
+           python-pytest-openfiles
+           python-setuptools-scm))
     (propagated-inputs
      (list python-asdf
            python-astropy
            python-crds
            python-stdatamodels))
-    (native-inputs
-     (list ;; python-jwst ; cycle:  python-stpipe -> python-jwst -> python-stpipe
-           python-pytest
-           python-pytest-doctestplus
-           python-pytest-openfiles
-           python-setuptools-scm))
     (home-page "https://github.com/spacetelescope/stpipe")
     (synopsis "Framework for calibration pipeline software")
     (description
-- 
2.46.0

[bug#75015] [PATCH 38/38] gnu: Add python-pysat.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-pysat): New variable.

Change-Id: I689f2423bd811af31190aac37111340b17d0aa0f
---
 gnu/packages/astronomy.scm | 57 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 57 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a0fb2cedf2..6e3e6fb928 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5634,6 +5634,63 @@ (define-public python-pyregion
 @end itemize")
     (license license:expat)))
 
+(define-public python-pysat
+  (package
+    (name "python-pysat")
+    (version "3.2.1")
+    (source
+     (origin
+       (method git-fetch) ; no tests data in the PyPI tarball
+       (uri (git-reference
+             (url "https://github.com/pysat/pysat")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0xsxj66ybh7q3n68nlasz23x8lsdamny92r960gipzk8xmwwzmcw"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list "--durations=10" ; report 10 slowest tests
+              ;; Tests require pysatSpaceWeather which is not packed yet.
+              "--ignore=pysat/tests/test_utils_files.py"
+              "-k" "not test_from_os")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'pre-check
+            (lambda _
+              ;; Do not run test coverage.
+              (substitute* "pyproject.toml"
+                ((".*addopts.*cov.*") ""))
+              ;; No such file or directory: '/homeless-shelter/.pysat'
+              (setenv "HOME" "/tmp")
+              (mkdir "pysatData")
+              (invoke "python" "-c"
+                      "import pysat; pysat.params['data_dirs'] = 'pysatData'"))))))
+    (native-inputs
+     (list python-pytest
+           python-pytest-xdist
+           python-setuptools
+           python-wheel))
+    (propagated-inputs
+     (list python-dask
+           python-netcdf4
+           python-numpy
+           python-pandas
+           python-portalocker
+           python-scipy
+           python-toolz
+           python-xarray))
+    (home-page "https://github.com/pysat/pysat")
+    (synopsis "Supports science analysis across disparate data platforms")
+    (description
+     "The Python Satellite Data Analysis Toolkit (pysat) provides a simple and
+flexible interface for robust data analysis from beginning to end - including
+downloading, loading, cleaning, managing, processing, and analyzing
+data.  Pysat's plug-in design allows analysis support for any data, including
+user provided data sets.")
+    (license license:bsd-3)))
+
 (define-public python-pysiaf
   (package
     (name "python-pysiaf")
-- 
2.46.0