From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:2:bcc0::]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) by ms0.migadu.com with LMTPS id gLTqMBY9jGDBKwEAgWs5BA (envelope-from ) for ; Fri, 30 Apr 2021 19:23:34 +0200 Received: from aspmx1.migadu.com ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id QDuULBY9jGBtQgAAB5/wlQ (envelope-from ) for ; Fri, 30 Apr 2021 17:23:34 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id C7B7922665 for ; Fri, 30 Apr 2021 19:23:33 +0200 (CEST) Received: from localhost ([::1]:42888 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lcWrT-0002yE-MF for larch@yhetil.org; Fri, 30 Apr 2021 13:23:31 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:34784) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lcWK6-0004Ll-CK for guix-patches@gnu.org; Fri, 30 Apr 2021 12:49:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:48176) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lcWK6-0000r6-2E for guix-patches@gnu.org; Fri, 30 Apr 2021 12:49:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lcWK6-0002Ep-1X for guix-patches@gnu.org; Fri, 30 Apr 2021 12:49:02 -0400 Subject: bug#47930: [PATCH] gnu: Add pbgzip. Resent-From: Roel Janssen Original-Sender: "Debbugs-submit" Resent-To: guix-patches@gnu.org Resent-Date: Fri, 30 Apr 2021 16:49:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: cc-closed 47930 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Efraim Flashner Cc: Xinglu Chen , 47930-done@debbugs.gnu.org Mail-Followup-To: 47930@debbugs.gnu.org, roel@gnu.org, roel@gnu.org Received: via spool by 47930-done@debbugs.gnu.org id=D47930.16198012928526 (code D ref 47930); Fri, 30 Apr 2021 16:49:01 +0000 Received: (at 47930-done) by debbugs.gnu.org; 30 Apr 2021 16:48:12 +0000 Received: from localhost ([127.0.0.1]:59721 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lcWJH-0002DR-Ji for submit@debbugs.gnu.org; Fri, 30 Apr 2021 12:48:11 -0400 Received: from eggs.gnu.org ([209.51.188.92]:54586) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lcWJF-0002DC-3q for 47930-done@debbugs.gnu.org; Fri, 30 Apr 2021 12:48:09 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:52081) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lcWJ8-0000lc-BH; 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aspmx1.migadu.com; dkim=none; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Spam-Score: -2.96 Authentication-Results: aspmx1.migadu.com; dkim=none; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: C7B7922665 X-Spam-Score: -2.96 X-Migadu-Scanner: scn0.migadu.com X-TUID: UJCJ8TxmPWbl On Fri, 2021-04-30 at 14:53 +0300, Efraim Flashner wrote: > > > > From 1af29f66980ba19740e05a27135f141e23b7fd3f Mon Sep 17 00:00:00 > > 2001 > > From: Roel Janssen > > Date: Fri, 30 Apr 2021 13:47:43 +0200 > > Subject: [PATCH] gnu: Add pbgzip. > > > > ... > > +      (synopsis "Parallel Block GZIP") > > +      (description "This package implements parallel block gzip.  > > For many > > +formats, in particular genomics data formats, data are compressed > > in > > I wasn't sure about 'data are' vs 'data is' but I think data here is > plural, so 'data are' should be right. > > > +fixed-length blocks such that they can be easily indexed based on > > a (genomic) > > +coordinate order, since typically each block is sorted according > > to this order. > > +This allows for each block to be individually compressed > > (deflated), or more > > +importantly, decompressed (inflated), with the latter enabling > > random retrieval > > +of data in large files (gigabytes to terabytes).  @code{pbgzip} is > > not limited > > +to any particular format, but certain features are tailored to > > genomics data > > +formats when enabled.  Parallel decompression is somewhat faster, > > but the true > > +speedup comes during compression.") > > +      (license license:expat)))) > > + > >  (define-public blasr-libcpp > >    (package > >      (name "blasr-libcpp") > > -- > > 2.31.1 > > > > Looks good to me! > Thank you Efraim, and thank you Xinglu Chen. I pushed this patch. Kind regards, Roel Janssen