all messages for Guix-related lists mirrored at yhetil.org
 help / color / mirror / code / Atom feed
From: Roel Janssen <roel@gnu.org>
To: Efraim Flashner <efraim@flashner.co.il>
Cc: Xinglu Chen <public@yoctocell.xyz>, 47930-done@debbugs.gnu.org
Subject: bug#47930: [PATCH] gnu: Add pbgzip.
Date: Fri, 30 Apr 2021 18:47:59 +0200	[thread overview]
Message-ID: <288c615cc9a12c6333a28f7002429140c2924ae5.camel@gnu.org> (raw)
In-Reply-To: <YIvvxUphQsqgDL2S@3900XT>

On Fri, 2021-04-30 at 14:53 +0300, Efraim Flashner wrote:
> 
> 
> > From 1af29f66980ba19740e05a27135f141e23b7fd3f Mon Sep 17 00:00:00
> > 2001
> > From: Roel Janssen <roel@gnu.org>
> > Date: Fri, 30 Apr 2021 13:47:43 +0200
> > Subject: [PATCH] gnu: Add pbgzip.
> > 
> > ...
> > +      (synopsis "Parallel Block GZIP")
> > +      (description "This package implements parallel block gzip. 
> > For many
> > +formats, in particular genomics data formats, data are compressed
> > in
> 
> I wasn't sure about 'data are' vs 'data is' but I think data here is
> plural, so 'data are' should be right.
> 
> > +fixed-length blocks such that they can be easily indexed based on
> > a (genomic)
> > +coordinate order, since typically each block is sorted according
> > to this order.
> > +This allows for each block to be individually compressed
> > (deflated), or more
> > +importantly, decompressed (inflated), with the latter enabling
> > random retrieval
> > +of data in large files (gigabytes to terabytes).  @code{pbgzip} is
> > not limited
> > +to any particular format, but certain features are tailored to
> > genomics data
> > +formats when enabled.  Parallel decompression is somewhat faster,
> > but the true
> > +speedup comes during compression.")
> > +      (license license:expat))))
> > +
> >  (define-public blasr-libcpp
> >    (package
> >      (name "blasr-libcpp")
> > -- 
> > 2.31.1
> > 
> 
> Looks good to me!
> 

Thank you Efraim, and thank you Xinglu Chen.
I pushed this patch.

Kind regards,
Roel Janssen






      reply	other threads:[~2021-04-30 17:23 UTC|newest]

Thread overview: 10+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2021-04-21 12:26 [bug#47930] [PATCH] gnu: Add pbgzip Roel Janssen
2021-04-21 21:44 ` Xinglu Chen
2021-04-21 21:45 ` Xinglu Chen
2021-04-22 16:40   ` Maxime Devos
2021-04-29  7:29     ` Efraim Flashner
2021-04-29 12:22       ` Roel Janssen
2021-04-30  8:30         ` Xinglu Chen
2021-04-30 11:48           ` Roel Janssen
2021-04-30 11:53             ` Efraim Flashner
2021-04-30 16:47               ` Roel Janssen [this message]

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=288c615cc9a12c6333a28f7002429140c2924ae5.camel@gnu.org \
    --to=roel@gnu.org \
    --cc=47930-done@debbugs.gnu.org \
    --cc=efraim@flashner.co.il \
    --cc=public@yoctocell.xyz \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this external index

	https://git.savannah.gnu.org/cgit/guix.git

This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.