[bug#66573] [PATCH 00/11] Update Open MPI and its dependencies

[bug#66573] [PATCH 00/11] Update Open MPI and its dependencies

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

Hello,

This patch series updates Open MPI and its dependencies.  I tested
and confirmed there was no performance regression on cluster nodes
with Omni-Path nor on those with Mellanox InfiniBand.

This was also the first time I got continuous integration to build
package upgrades that had not been committed yet, using this neat
manifest that uses the ‘--with-latest’ package transformation option:

  https://gitlab.inria.fr/guix-hpc/guix-hpc/-/blob/b12e76577019aa576d6a33261294744352946c46/cutting-edge.manifest

Result:

  https://guix.bordeaux.inria.fr/jobset/guix-hpc-cutting-edge

Fun, no?  (One slight annoyance: ‘--with-latest’ dismisses patches
and snippets so for instance the derivation it computes for ‘slurm’
isn’t the same as what you get after ‘guix refresh -u slurm’ because
in the latter case you’re applying snippets.)

Thanks,
Ludo’.

Ludovic Courtès (11):
  gnu: opensm: Use the right version string for the doc directory.
  gnu: opensm: Use gexps.
  gnu: slurm: Add 23.02.6.
  gnu: hwloc: Update to 2.9.3.
  gnu: opensm: Update to 3.3.24.
  gnu: ucx: Update to 1.15.0.
  gnu: rdma-core: Update to 48.0.
  gnu: libfabric: Update to 1.19.0.
  gnu: psm2: Update to 12.0.
  gnu: openmpi: Update to 4.1.6.
  gnu: intel-mpi-benchmarks: Update to 2021.3.

 gnu/packages/benchmark.scm         |  4 ++--
 gnu/packages/fabric-management.scm | 34 ++++++++++++++++--------------
 gnu/packages/linux.scm             | 12 +++++------
 gnu/packages/mpi.scm               |  8 +++----
 gnu/packages/parallel.scm          | 20 +++++++++++++++---
 5 files changed, 47 insertions(+), 31 deletions(-)


base-commit: a0d2ecde943bd1854ddbb7c0cad35a1fc64dc5ab
-- 
2.41.0

[bug#66573] [PATCH 01/11] gnu: opensm: Use the right version string for the doc directory.

[Ludovic Courtès]

Previously, when built with ‘--with-latest=opensm’, the package would
install its documentation under a directory with the wrong version
string.

* gnu/packages/fabric-management.scm (opensm)[arguments]: Use the name
and version of THIS-PACKAGE.
---
 gnu/packages/fabric-management.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index b6b2e5176c..545cd4ff67 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -73,11 +73,11 @@ (define-public opensm
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((base (assoc-ref outputs "out"))
                     (doc  (string-append base "/share/doc/"
-                                         ,name "-" ,version)))
+                                         ,(package-name this-package) "-"
+                                         ,(package-version this-package))))
                (for-each (lambda (file)
                            (install-file file doc))
-                         (find-files "doc"))
-               #t))))))
+                         (find-files "doc"))))))))
     (home-page "https://www.openfabrics.org/")
     (synopsis "OpenIB InfiniBand Subnet Manager and management utilities")
     (description "\
-- 
2.41.0

[bug#66573] [PATCH 02/11] gnu: opensm: Use gexps.

[Ludovic Courtès]

* gnu/packages/fabric-management.scm (opensm)[arguments]: Use gexps.
---
 gnu/packages/fabric-management.scm | 26 ++++++++++++++------------
 1 file changed, 14 insertions(+), 12 deletions(-)

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index 545cd4ff67..740c570911 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -66,18 +66,20 @@ (define-public opensm
     (inputs
      (list rdma-core))
     (arguments
-     `(#:configure-flags '("--disable-static")
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'install 'install-doc
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let* ((base (assoc-ref outputs "out"))
-                    (doc  (string-append base "/share/doc/"
-                                         ,(package-name this-package) "-"
-                                         ,(package-version this-package))))
-               (for-each (lambda (file)
-                           (install-file file doc))
-                         (find-files "doc"))))))))
+     (list
+      #:configure-flags #~'("--disable-static")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'install 'install-doc
+            (lambda* (#:key outputs #:allow-other-keys)
+              (let* ((base (assoc-ref outputs "out"))
+                     (doc (string-append base "/share/doc/"
+                                         #$(package-name this-package)
+                                         "-"
+                                         #$(package-version this-package))))
+                (for-each (lambda (file)
+                            (install-file file doc))
+                          (find-files "doc"))))))))
     (home-page "https://www.openfabrics.org/")
     (synopsis "OpenIB InfiniBand Subnet Manager and management utilities")
     (description "\
-- 
2.41.0

[bug#66573] [PATCH 03/11] gnu: slurm: Add 23.02.6.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/parallel.scm (slurm): Update to 23.02.6.
(slurm-22.05): New variable.
---
 gnu/packages/parallel.scm | 20 +++++++++++++++++---
 1 file changed, 17 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/parallel.scm b/gnu/packages/parallel.scm
index df7b498d1f..b014a404a6 100644
--- a/gnu/packages/parallel.scm
+++ b/gnu/packages/parallel.scm
@@ -9,7 +9,7 @@
 ;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2018–2022 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org>
-;;; Copyright © 2019-2022 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2019-2023 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2020 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2021 Stefan Reichör <stefan@xsteve.at>
 ;;;
@@ -185,7 +185,7 @@ (define-public xjobs
 (define-public slurm
   (package
     (name "slurm")
-    (version "22.05.1")
+    (version "23.02.6")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -193,7 +193,7 @@ (define-public slurm
                     version ".tar.bz2"))
               (sha256
                (base32
-                "0f3hhlki8g7slllsnyj1qikbsvr62i0hig85lcdcfnmsagzlhbyi"))
+                "08rz3r1rlnb3pmfdnbh542gm44ja0fdy8rkj4vm4lclc48cvqp2a"))
               (modules '((guix build utils)))
               (snippet
                '(begin
@@ -281,6 +281,20 @@ (define-public slurm
 ;; As noted in the link, YY.MM is the release scheme, and the 'maintenance'
 ;; digit does not introduce incompatibilities.
 
+(define-public slurm-22.05
+  (package
+    (inherit slurm)
+    (version "22.05.1")
+    (source (origin
+              (inherit (package-source slurm))
+              (method url-fetch)
+              (uri (string-append
+                    "https://download.schedmd.com/slurm/slurm-"
+                    version ".tar.bz2"))
+              (sha256
+               (base32
+                "0f3hhlki8g7slllsnyj1qikbsvr62i0hig85lcdcfnmsagzlhbyi"))))))
+
 (define-public slurm-21.08
   (package
     (inherit slurm)
-- 
2.41.0

[bug#66573] [PATCH 04/11] gnu: hwloc: Update to 2.9.3.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.3.
---
 gnu/packages/mpi.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm
index baf6ce11e0..0f2747b499 100644
--- a/gnu/packages/mpi.scm
+++ b/gnu/packages/mpi.scm
@@ -141,7 +141,7 @@ (define-public hwloc-1
 (define-public hwloc-2
   (package
     (inherit hwloc-1)
-    (version "2.9.2")
+    (version "2.9.3")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://download.open-mpi.org/release/hwloc/v"
@@ -149,7 +149,7 @@ (define-public hwloc-2
                                   "/hwloc-" version ".tar.bz2"))
               (sha256
                (base32
-                "1kv0n3b9knb8aawf0hxaxn9wc9bbpwh676r2gmb0pc7qfzvgv1qa"))))
+                "1v0dzzgzp40slakdwdb8vy0hy4m2ff3gnzqpzi8k8vbgap764h2w"))))
 
     ;; libnuma is no longer needed.
     (inputs (modify-inputs (package-inputs hwloc-1)
-- 
2.41.0

[bug#66573] [PATCH 05/11] gnu: opensm: Update to 3.3.24.

[Ludovic Courtès]

* gnu/packages/fabric-management.scm (opensm): Update to 3.3.24.
---
 gnu/packages/fabric-management.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index 740c570911..ccdaa0ee0a 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -46,7 +46,7 @@ (define-module (gnu packages fabric-management)
 (define-public opensm
   (package
     (name "opensm")
-    (version "3.3.22")
+    (version "3.3.24")
     (source
      (origin
        (method url-fetch)
@@ -54,7 +54,7 @@ (define-public opensm
         (string-append "https://github.com/linux-rdma/opensm/releases/download/"
                        version "/opensm-" version ".tar.gz"))
        (sha256
-        (base32 "19scwwpwqhqsyq4hbr5cflcmypss828lalxxd36yby7mbimca38y"))))
+        (base32 "0q74sx8y23h7picdzb4g5r84wcvc9hr9vzsdawkl812b38vmwcx3"))))
     (build-system gnu-build-system)
     (native-inputs
      (list bison
-- 
2.41.0

[bug#66573] [PATCH 06/11] gnu: ucx: Update to 1.15.0.

[Ludovic Courtès]

* gnu/packages/fabric-management.scm (ucx): Update to 1.15.0.
---
 gnu/packages/fabric-management.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index ccdaa0ee0a..f41b4e99ed 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -185,7 +185,7 @@ (define-public ibutils
 (define-public ucx
   (package
     (name "ucx")
-    (version "1.14.0")
+    (version "1.15.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -195,7 +195,7 @@ (define-public ucx
               (patches (search-patches "ucx-tcp-iface-ioctl.patch"))
               (sha256
                (base32
-                "0ki2r768wqm92qv06wxrh3kv2nl2yj4ds9fz0s0b5rr2ycjiw9ir"))))
+                "1mk46vyfp8hsivk88s8gv0nf458jfs59fczpf66wwa3a9yp324jp"))))
     (build-system gnu-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#66573] [PATCH 07/11] gnu: rdma-core: Update to 48.0.

[Ludovic Courtès]

* gnu/packages/linux.scm (rdma-core): Update to 48.0.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 6bb6d62182..4abc34c0b3 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -6749,7 +6749,7 @@ (define-public ntfsfix/static
 (define-public rdma-core
   (package
     (name "rdma-core")
-    (version "44.0")
+    (version "48.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/linux-rdma/rdma-core"
@@ -6757,7 +6757,7 @@ (define-public rdma-core
                                   version ".tar.gz"))
               (sha256
                (base32
-                "12w5v74wz1akac09frw7qk1yd06b00239zh7bvbvqyzjc0g61mi5"))))
+                "0h281dw2yph8pzfsr1wblqy6pb8nd9yj1pdf5c62zwc1l9b2fa3q"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f                      ;no tests
-- 
2.41.0

[bug#66573] [PATCH 08/11] gnu: libfabric: Update to 1.19.0.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/linux.scm (libfabric): Update to 1.19.0.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 4abc34c0b3..96b5cc6e16 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -8572,7 +8572,7 @@ (define-public procenv
 (define-public libfabric
   (package
     (name "libfabric")
-    (version "1.11.2")
+    (version "1.19.0")
     (source
      (origin
        (method url-fetch)
@@ -8580,7 +8580,7 @@ (define-public libfabric
         (string-append "https://github.com/ofiwg/libfabric/releases/download/v"
                        version "/libfabric-" version ".tar.bz2"))
        (sha256
-        (base32 "1nnpfkwxhim2nqjkb1vwrb4wj4j3l6w6yvvy69fqam2snlhshazz"))))
+        (base32 "17pg0fb4fa77r1bmp0xk535m8n8fadpfdg93cb280ghhx55pck7i"))))
     (build-system gnu-build-system)
     (inputs `(("rdma-core" ,rdma-core)
               ,@(match (%current-system)
-- 
2.41.0

[bug#66573] [PATCH 09/11] gnu: psm2: Update to 12.0.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/linux.scm (psm2): Update to 12.0.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 96b5cc6e16..fb319d4a65 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -8861,7 +8861,7 @@ (define-public mbpfan
 (define-public psm2
   (package
     (name "psm2")
-    (version "11.2.230")
+    (version "12.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -8870,7 +8870,7 @@ (define-public psm2
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1bm7ndhi8qzmd0plnggj2h52yb34bab4k38530nsnkmv9smwdivl"))))
+                "04nar65ac11qqx41vkfs7iip8kfiah0zms7l4rmsxncpiz2iqfik"))))
     (build-system gnu-build-system)
     (arguments
      (list #:make-flags
-- 
2.41.0

[bug#66573] [PATCH 10/11] gnu: openmpi: Update to 4.1.6.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/mpi.scm (openmpi): Update to 4.1.6.
---
 gnu/packages/mpi.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm
index 0f2747b499..85afc8cefc 100644
--- a/gnu/packages/mpi.scm
+++ b/gnu/packages/mpi.scm
@@ -184,7 +184,7 @@ (define-public hwloc
 (define-public openmpi
   (package
     (name "openmpi")
-    (version "4.1.5")
+    (version "4.1.6")
     (source
      (origin
        (method url-fetch)
@@ -192,7 +192,7 @@ (define-public openmpi
                            (version-major+minor version)
                            "/downloads/openmpi-" version ".tar.bz2"))
        (sha256
-        (base32 "1qyvc77diyrxmviirdwqpibgm32c4vkdlvw8g79rsf2pq9mrhh56"))
+        (base32 "05g4245v0pdqcyjmgn50519ry5v5q8ig26iinmiynvaihm29jh7p"))
        (patches (search-patches "openmpi-mtl-priorities.patch"))))
 
     (properties
-- 
2.41.0

[bug#66573] [PATCH 11/11] gnu: intel-mpi-benchmarks: Update to 2021.3.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/benchmark.scm (intel-mpi-benchmarks/openmpi): Update to
2021.3.
---
 gnu/packages/benchmark.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/benchmark.scm b/gnu/packages/benchmark.scm
index 4d92457e59..08fece6e91 100644
--- a/gnu/packages/benchmark.scm
+++ b/gnu/packages/benchmark.scm
@@ -137,7 +137,7 @@ (define-public fio
 (define-public intel-mpi-benchmarks/openmpi
   (package
     (name "intel-mpi-benchmarks")
-    (version "2019.6")
+    (version "2021.3")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -146,7 +146,7 @@ (define-public intel-mpi-benchmarks/openmpi
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "02hxbk9g9nl59bk5qcfl3djj7b58vsqys340m1xdbyqwcrbnahh9"))
+                "04kczch2hlfzbgk929vcxx480kc6raba8rbz246j7d26k1z1zh8h"))
               (modules '((guix build utils)))
               (snippet
                '(begin
-- 
2.41.0

[bug#66573] [PATCH v2 01/11] gnu: opensm: Use the right version string for the doc directory.

[Ludovic Courtès]

Previously, when built with ‘--with-latest=opensm’, the package would
install its documentation under a directory with the wrong version
string.

* gnu/packages/fabric-management.scm (opensm)[arguments]: Use the name
and version of THIS-PACKAGE.
---
 gnu/packages/fabric-management.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index b6b2e5176c..545cd4ff67 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -73,11 +73,11 @@ (define-public opensm
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((base (assoc-ref outputs "out"))
                     (doc  (string-append base "/share/doc/"
-                                         ,name "-" ,version)))
+                                         ,(package-name this-package) "-"
+                                         ,(package-version this-package))))
                (for-each (lambda (file)
                            (install-file file doc))
-                         (find-files "doc"))
-               #t))))))
+                         (find-files "doc"))))))))
     (home-page "https://www.openfabrics.org/")
     (synopsis "OpenIB InfiniBand Subnet Manager and management utilities")
     (description "\

base-commit: a0d2ecde943bd1854ddbb7c0cad35a1fc64dc5ab
-- 
2.41.0

[bug#66573] [PATCH v2 02/11] gnu: opensm: Use gexps.

[Ludovic Courtès]

* gnu/packages/fabric-management.scm (opensm)[arguments]: Use gexps.
---
 gnu/packages/fabric-management.scm | 26 ++++++++++++++------------
 1 file changed, 14 insertions(+), 12 deletions(-)

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index 545cd4ff67..740c570911 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -66,18 +66,20 @@ (define-public opensm
     (inputs
      (list rdma-core))
     (arguments
-     `(#:configure-flags '("--disable-static")
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'install 'install-doc
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let* ((base (assoc-ref outputs "out"))
-                    (doc  (string-append base "/share/doc/"
-                                         ,(package-name this-package) "-"
-                                         ,(package-version this-package))))
-               (for-each (lambda (file)
-                           (install-file file doc))
-                         (find-files "doc"))))))))
+     (list
+      #:configure-flags #~'("--disable-static")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'install 'install-doc
+            (lambda* (#:key outputs #:allow-other-keys)
+              (let* ((base (assoc-ref outputs "out"))
+                     (doc (string-append base "/share/doc/"
+                                         #$(package-name this-package)
+                                         "-"
+                                         #$(package-version this-package))))
+                (for-each (lambda (file)
+                            (install-file file doc))
+                          (find-files "doc"))))))))
     (home-page "https://www.openfabrics.org/")
     (synopsis "OpenIB InfiniBand Subnet Manager and management utilities")
     (description "\
-- 
2.41.0

[bug#66573] [PATCH v2 03/11] gnu: slurm: Add 23.02.6.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/parallel.scm (slurm): Update to 23.02.6.
(slurm-22.05): New variable.
---
 gnu/packages/parallel.scm | 20 +++++++++++++++++---
 1 file changed, 17 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/parallel.scm b/gnu/packages/parallel.scm
index df7b498d1f..b014a404a6 100644
--- a/gnu/packages/parallel.scm
+++ b/gnu/packages/parallel.scm
@@ -9,7 +9,7 @@
 ;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2018–2022 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org>
-;;; Copyright © 2019-2022 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2019-2023 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2020 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2021 Stefan Reichör <stefan@xsteve.at>
 ;;;
@@ -185,7 +185,7 @@ (define-public xjobs
 (define-public slurm
   (package
     (name "slurm")
-    (version "22.05.1")
+    (version "23.02.6")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -193,7 +193,7 @@ (define-public slurm
                     version ".tar.bz2"))
               (sha256
                (base32
-                "0f3hhlki8g7slllsnyj1qikbsvr62i0hig85lcdcfnmsagzlhbyi"))
+                "08rz3r1rlnb3pmfdnbh542gm44ja0fdy8rkj4vm4lclc48cvqp2a"))
               (modules '((guix build utils)))
               (snippet
                '(begin
@@ -281,6 +281,20 @@ (define-public slurm
 ;; As noted in the link, YY.MM is the release scheme, and the 'maintenance'
 ;; digit does not introduce incompatibilities.
 
+(define-public slurm-22.05
+  (package
+    (inherit slurm)
+    (version "22.05.1")
+    (source (origin
+              (inherit (package-source slurm))
+              (method url-fetch)
+              (uri (string-append
+                    "https://download.schedmd.com/slurm/slurm-"
+                    version ".tar.bz2"))
+              (sha256
+               (base32
+                "0f3hhlki8g7slllsnyj1qikbsvr62i0hig85lcdcfnmsagzlhbyi"))))))
+
 (define-public slurm-21.08
   (package
     (inherit slurm)
-- 
2.41.0

[bug#66573] [PATCH v2 04/11] gnu: hwloc: Update to 2.9.3.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.3.
---
 gnu/packages/mpi.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm
index baf6ce11e0..0f2747b499 100644
--- a/gnu/packages/mpi.scm
+++ b/gnu/packages/mpi.scm
@@ -141,7 +141,7 @@ (define-public hwloc-1
 (define-public hwloc-2
   (package
     (inherit hwloc-1)
-    (version "2.9.2")
+    (version "2.9.3")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://download.open-mpi.org/release/hwloc/v"
@@ -149,7 +149,7 @@ (define-public hwloc-2
                                   "/hwloc-" version ".tar.bz2"))
               (sha256
                (base32
-                "1kv0n3b9knb8aawf0hxaxn9wc9bbpwh676r2gmb0pc7qfzvgv1qa"))))
+                "1v0dzzgzp40slakdwdb8vy0hy4m2ff3gnzqpzi8k8vbgap764h2w"))))
 
     ;; libnuma is no longer needed.
     (inputs (modify-inputs (package-inputs hwloc-1)
-- 
2.41.0

[bug#66573] [PATCH v2 05/11] gnu: opensm: Update to 3.3.24.

[Ludovic Courtès]

* gnu/packages/fabric-management.scm (opensm): Update to 3.3.24.
---
 gnu/packages/fabric-management.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index 740c570911..ccdaa0ee0a 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -46,7 +46,7 @@ (define-module (gnu packages fabric-management)
 (define-public opensm
   (package
     (name "opensm")
-    (version "3.3.22")
+    (version "3.3.24")
     (source
      (origin
        (method url-fetch)
@@ -54,7 +54,7 @@ (define-public opensm
         (string-append "https://github.com/linux-rdma/opensm/releases/download/"
                        version "/opensm-" version ".tar.gz"))
        (sha256
-        (base32 "19scwwpwqhqsyq4hbr5cflcmypss828lalxxd36yby7mbimca38y"))))
+        (base32 "0q74sx8y23h7picdzb4g5r84wcvc9hr9vzsdawkl812b38vmwcx3"))))
     (build-system gnu-build-system)
     (native-inputs
      (list bison
-- 
2.41.0

[bug#66573] [PATCH v2 06/11] gnu: ucx: Update to 1.15.0.

[Ludovic Courtès]

* gnu/packages/fabric-management.scm (ucx): Update to 1.15.0.
* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Update for 1.15.0.
---
 gnu/packages/fabric-management.scm            |   4 +-
 .../patches/ucx-tcp-iface-ioctl.patch         | 105 +++++++++++-------
 2 files changed, 64 insertions(+), 45 deletions(-)

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index ccdaa0ee0a..f41b4e99ed 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -185,7 +185,7 @@ (define-public ibutils
 (define-public ucx
   (package
     (name "ucx")
-    (version "1.14.0")
+    (version "1.15.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -195,7 +195,7 @@ (define-public ucx
               (patches (search-patches "ucx-tcp-iface-ioctl.patch"))
               (sha256
                (base32
-                "0ki2r768wqm92qv06wxrh3kv2nl2yj4ds9fz0s0b5rr2ycjiw9ir"))))
+                "1mk46vyfp8hsivk88s8gv0nf458jfs59fczpf66wwa3a9yp324jp"))))
     (build-system gnu-build-system)
     (arguments
      (list
diff --git a/gnu/packages/patches/ucx-tcp-iface-ioctl.patch b/gnu/packages/patches/ucx-tcp-iface-ioctl.patch
index c441a0861a..2a0e4ce138 100644
--- a/gnu/packages/patches/ucx-tcp-iface-ioctl.patch
+++ b/gnu/packages/patches/ucx-tcp-iface-ioctl.patch
@@ -3,102 +3,121 @@ TCP network interfaces cannot be obtained via /sys/class/net.  This patch
 provides alternative code that uses the SIOCGIFCONF ioctl to get the
 names of the available TCP network interfaces.
 
+Initially submitted at <https://github.com/openucx/ucx/pull/4462>.
+
 diff --git a/src/uct/tcp/tcp_iface.c b/src/uct/tcp/tcp_iface.c
-index cad4a2709..7c1d2c9de 100644
+index 6a6cd34fa..af32bb2e9 100644
 --- a/src/uct/tcp/tcp_iface.c
 +++ b/src/uct/tcp/tcp_iface.c
-@@ -17,6 +17,8 @@
- #include <sys/poll.h>
+@@ -18,6 +18,8 @@
  #include <netinet/tcp.h>
  #include <dirent.h>
+ #include <float.h>
 +#include <net/if.h>
 +#include <sys/ioctl.h>
  
+ #define UCT_TCP_IFACE_NETDEV_DIR "/sys/class/net"
  
- extern ucs_class_t UCS_CLASS_DECL_NAME(uct_tcp_iface_t);
-@@ -586,6 +588,68 @@ static UCS_CLASS_DEFINE_NEW_FUNC(uct_tcp_iface_t, uct_iface_t, uct_md_h,
+@@ -875,6 +877,85 @@ static UCS_CLASS_DEFINE_NEW_FUNC(uct_tcp_iface_t, uct_iface_t, uct_md_h,
                                   uct_worker_h, const uct_iface_params_t*,
                                   const uct_iface_config_t*);
  
 +/* Fetch information about available network devices through an ioctl.  */
-+static ucs_status_t query_devices_ioctl(uct_md_h md,
-+					uct_tl_device_resource_t **tl_devices_p,
-+					unsigned *num_tl_devices_p)
++static ucs_status_t uct_tcp_query_devices_ioctl(uct_md_h md,
++                                                uct_tl_device_resource_t **devices_p,
++                                                unsigned *num_devices_p)
 +{
 +    int sock, err, i;
-+    uct_tl_device_resource_t *resources, *tmp;
-+    unsigned num_resources;
++    uct_tl_device_resource_t *devices, *tmp;
++    unsigned num_devices;
 +    ucs_status_t status;
 +    struct ifconf conf;
-+    struct ifreq reqs[10];
 +
-+    conf.ifc_len = sizeof reqs;
-+    conf.ifc_req = reqs;
++    conf.ifc_len = 0;
++    conf.ifc_req = NULL;
 +
-+    sock = socket(SOCK_STREAM, AF_INET, 0);
-+    if (sock < 0) {
-+	ucs_error("socket(2) failed: %m");
-+	status = UCS_ERR_IO_ERROR;
-+	goto out;
++    status = ucs_socket_create(AF_INET, SOCK_STREAM, &sock);
++    if (status != UCS_OK) {
++        goto out;
 +    }
 +
 +    err = ioctl(sock, SIOCGIFCONF, &conf);
 +    if (err < 0) {
-+	ucs_error("SIOCGIFCONF ioctl failed: %m");
-+	status = UCS_ERR_IO_ERROR;
-+	goto out;
++        ucs_error("ioctl(SIOCGIFCONF) failed: %m");
++        status = UCS_ERR_IO_ERROR;
++        goto out;
 +    }
 +
-+    resources     = NULL;
-+    num_resources = 0;
-+    for (i = 0; i < conf.ifc_len / sizeof(struct ifreq); i++) {
-+	const char *name = reqs[i].ifr_name;
++    conf.ifc_req = ucs_calloc(1, conf.ifc_len, "ifreq");
++    if (conf.ifc_req == NULL) {
++        ucs_error("memory alocation failed");
++        status = UCS_ERR_NO_MEMORY;
++        goto out;
++    }
++
++    err = ioctl(sock, SIOCGIFCONF, &conf);
++    if (err < 0) {
++        ucs_error("ioctl(SIOCGIFCONF) failed: %m");
++        status = UCS_ERR_IO_ERROR;
++        goto out_free;
++    }
++
++    devices     = NULL;
++    num_devices = 0;
++    for (i = 0; i < (conf.ifc_len / sizeof(struct ifreq)); i++) {
++        const char *name = conf.ifc_req[i].ifr_name;
++	sa_family_t family = conf.ifc_req[i].ifr_addr.sa_family;
 +
-+        if (!ucs_netif_is_active(name, AF_INET)) {
++        if (!ucs_netif_is_active(name, family)) {
 +            continue;
 +        }
 +
-+        tmp = ucs_realloc(resources, sizeof(*resources) * (num_resources + 1),
-+                          "tcp resources");
++        tmp = ucs_realloc(devices, sizeof(*devices) * (num_devices + 1),
++                          "tcp devices");
 +        if (tmp == NULL) {
-+            ucs_free(resources);
++            ucs_free(devices);
 +            status = UCS_ERR_NO_MEMORY;
-+            goto out;
++            goto out_free;
 +        }
-+        resources = tmp;
++        devices = tmp;
 +
-+        ucs_snprintf_zero(resources[i].name, sizeof(resources[i].name),
++        ucs_snprintf_zero(devices[num_devices].name,
++                          sizeof(devices[num_devices].name),
 +                          "%s", name);
-+        resources[i].type = UCT_DEVICE_TYPE_NET;
-+        ++num_resources;
++        devices[num_devices].type = UCT_DEVICE_TYPE_NET;
++        ++num_devices;
 +    }
 +
-+    *num_tl_devices_p = num_resources;
-+    *tl_devices_p     = resources;
-+    status            = UCS_OK;
++    *num_devices_p = num_devices;
++    *devices_p     = devices;
++    status         = UCS_OK;
 +
++out_free:
++    ucs_free(conf.ifc_req);
 +out:
-+    if (sock >= 0) close(sock);
++    if (sock >= 0) {
++        close(sock);
++    }
 +    return status;
 +}
 +
  ucs_status_t uct_tcp_query_devices(uct_md_h md,
                                     uct_tl_device_resource_t **devices_p,
                                     unsigned *num_devices_p)
-@@ -599,9 +663,9 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
+@@ -893,9 +974,9 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
  
      dir = opendir(UCT_TCP_IFACE_NETDEV_DIR);
      if (dir == NULL) {
 -        ucs_error("opendir(%s) failed: %m", UCT_TCP_IFACE_NETDEV_DIR);
 -        status = UCS_ERR_IO_ERROR;
 -        goto out;
-+	/* When /sys is unavailable, as can be the case in a container,
-+	 * resort to a good old 'ioctl'.  */
-+	return query_devices_ioctl(md, devices_p, num_devices_p);
++        /* When /sys is unavailable, as can be the case in a container,
++         * resort to a good old 'ioctl'.  */
++        return uct_tcp_query_devices_ioctl(md, devices_p, num_devices_p);
      }
  
      devices     = NULL;
-@@ -655,7 +719,6 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
+@@ -963,7 +1044,6 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
  
  out_closedir:
      closedir(dir);
-- 
2.41.0

[bug#66573] [PATCH v2 06/11] gnu: ucx: Update to 1.15.0.

[Ludovic Courtès]

Ludovic Courtès <ludo@gnu.org> skribis:

> * gnu/packages/fabric-management.scm (ucx): Update to 1.15.0.
> * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Update for 1.15.0.

The change compared to v1 is the updated patch here (somehow I was so
excited by my new tool that I failed to test the actual patch
adequately).

Ludo’.

[bug#66573] [PATCH v2 07/11] gnu: rdma-core: Update to 48.0.

[Ludovic Courtès]

* gnu/packages/linux.scm (rdma-core): Update to 48.0.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 6bb6d62182..4abc34c0b3 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -6749,7 +6749,7 @@ (define-public ntfsfix/static
 (define-public rdma-core
   (package
     (name "rdma-core")
-    (version "44.0")
+    (version "48.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/linux-rdma/rdma-core"
@@ -6757,7 +6757,7 @@ (define-public rdma-core
                                   version ".tar.gz"))
               (sha256
                (base32
-                "12w5v74wz1akac09frw7qk1yd06b00239zh7bvbvqyzjc0g61mi5"))))
+                "0h281dw2yph8pzfsr1wblqy6pb8nd9yj1pdf5c62zwc1l9b2fa3q"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f                      ;no tests
-- 
2.41.0

[bug#66573] [PATCH v2 08/11] gnu: libfabric: Update to 1.19.0.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/linux.scm (libfabric): Update to 1.19.0.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 4abc34c0b3..96b5cc6e16 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -8572,7 +8572,7 @@ (define-public procenv
 (define-public libfabric
   (package
     (name "libfabric")
-    (version "1.11.2")
+    (version "1.19.0")
     (source
      (origin
        (method url-fetch)
@@ -8580,7 +8580,7 @@ (define-public libfabric
         (string-append "https://github.com/ofiwg/libfabric/releases/download/v"
                        version "/libfabric-" version ".tar.bz2"))
        (sha256
-        (base32 "1nnpfkwxhim2nqjkb1vwrb4wj4j3l6w6yvvy69fqam2snlhshazz"))))
+        (base32 "17pg0fb4fa77r1bmp0xk535m8n8fadpfdg93cb280ghhx55pck7i"))))
     (build-system gnu-build-system)
     (inputs `(("rdma-core" ,rdma-core)
               ,@(match (%current-system)
-- 
2.41.0

[bug#66573] [PATCH v2 09/11] gnu: psm2: Update to 12.0.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/linux.scm (psm2): Update to 12.0.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 96b5cc6e16..fb319d4a65 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -8861,7 +8861,7 @@ (define-public mbpfan
 (define-public psm2
   (package
     (name "psm2")
-    (version "11.2.230")
+    (version "12.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -8870,7 +8870,7 @@ (define-public psm2
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1bm7ndhi8qzmd0plnggj2h52yb34bab4k38530nsnkmv9smwdivl"))))
+                "04nar65ac11qqx41vkfs7iip8kfiah0zms7l4rmsxncpiz2iqfik"))))
     (build-system gnu-build-system)
     (arguments
      (list #:make-flags
-- 
2.41.0

[bug#66573] [PATCH v2 10/11] gnu: openmpi: Update to 4.1.6.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/mpi.scm (openmpi): Update to 4.1.6.
---
 gnu/packages/mpi.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm
index 0f2747b499..85afc8cefc 100644
--- a/gnu/packages/mpi.scm
+++ b/gnu/packages/mpi.scm
@@ -184,7 +184,7 @@ (define-public hwloc
 (define-public openmpi
   (package
     (name "openmpi")
-    (version "4.1.5")
+    (version "4.1.6")
     (source
      (origin
        (method url-fetch)
@@ -192,7 +192,7 @@ (define-public openmpi
                            (version-major+minor version)
                            "/downloads/openmpi-" version ".tar.bz2"))
        (sha256
-        (base32 "1qyvc77diyrxmviirdwqpibgm32c4vkdlvw8g79rsf2pq9mrhh56"))
+        (base32 "05g4245v0pdqcyjmgn50519ry5v5q8ig26iinmiynvaihm29jh7p"))
        (patches (search-patches "openmpi-mtl-priorities.patch"))))
 
     (properties
-- 
2.41.0

[bug#66573] [PATCH v2 11/11] gnu: intel-mpi-benchmarks: Update to 2021.3.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/benchmark.scm (intel-mpi-benchmarks/openmpi): Update to
2021.3.
---
 gnu/packages/benchmark.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/benchmark.scm b/gnu/packages/benchmark.scm
index 4d92457e59..08fece6e91 100644
--- a/gnu/packages/benchmark.scm
+++ b/gnu/packages/benchmark.scm
@@ -137,7 +137,7 @@ (define-public fio
 (define-public intel-mpi-benchmarks/openmpi
   (package
     (name "intel-mpi-benchmarks")
-    (version "2019.6")
+    (version "2021.3")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -146,7 +146,7 @@ (define-public intel-mpi-benchmarks/openmpi
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "02hxbk9g9nl59bk5qcfl3djj7b58vsqys340m1xdbyqwcrbnahh9"))
+                "04kczch2hlfzbgk929vcxx480kc6raba8rbz246j7d26k1z1zh8h"))
               (modules '((guix build utils)))
               (snippet
                '(begin
-- 
2.41.0

[bug#66573] [PATCH v2.1 01/11] gnu: opensm: Use the right version string for the doc directory.

[Ludovic Courtès]

Previously, when built with ‘--with-latest=opensm’, the package would
install its documentation under a directory with the wrong version
string.

* gnu/packages/fabric-management.scm (opensm)[arguments]: Use the name
and version of THIS-PACKAGE.
---
 gnu/packages/fabric-management.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index b6b2e5176c..545cd4ff67 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -73,11 +73,11 @@ (define-public opensm
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((base (assoc-ref outputs "out"))
                     (doc  (string-append base "/share/doc/"
-                                         ,name "-" ,version)))
+                                         ,(package-name this-package) "-"
+                                         ,(package-version this-package))))
                (for-each (lambda (file)
                            (install-file file doc))
-                         (find-files "doc"))
-               #t))))))
+                         (find-files "doc"))))))))
     (home-page "https://www.openfabrics.org/")
     (synopsis "OpenIB InfiniBand Subnet Manager and management utilities")
     (description "\

base-commit: 4d748d344bb1891e2e32bf15db24131703d2f78c
-- 
2.41.0

[bug#66573] [PATCH v2.1 02/11] gnu: opensm: Use gexps.

[Ludovic Courtès]

* gnu/packages/fabric-management.scm (opensm)[arguments]: Use gexps.
---
 gnu/packages/fabric-management.scm | 26 ++++++++++++++------------
 1 file changed, 14 insertions(+), 12 deletions(-)

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index 545cd4ff67..740c570911 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -66,18 +66,20 @@ (define-public opensm
     (inputs
      (list rdma-core))
     (arguments
-     `(#:configure-flags '("--disable-static")
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'install 'install-doc
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let* ((base (assoc-ref outputs "out"))
-                    (doc  (string-append base "/share/doc/"
-                                         ,(package-name this-package) "-"
-                                         ,(package-version this-package))))
-               (for-each (lambda (file)
-                           (install-file file doc))
-                         (find-files "doc"))))))))
+     (list
+      #:configure-flags #~'("--disable-static")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'install 'install-doc
+            (lambda* (#:key outputs #:allow-other-keys)
+              (let* ((base (assoc-ref outputs "out"))
+                     (doc (string-append base "/share/doc/"
+                                         #$(package-name this-package)
+                                         "-"
+                                         #$(package-version this-package))))
+                (for-each (lambda (file)
+                            (install-file file doc))
+                          (find-files "doc"))))))))
     (home-page "https://www.openfabrics.org/")
     (synopsis "OpenIB InfiniBand Subnet Manager and management utilities")
     (description "\
-- 
2.41.0

[bug#66573] [PATCH v2.1 03/11] gnu: slurm: Add 23.02.6.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/parallel.scm (slurm): Update to 23.02.6.
(slurm-22.05): New variable.
---
 gnu/packages/parallel.scm | 20 +++++++++++++++++---
 1 file changed, 17 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/parallel.scm b/gnu/packages/parallel.scm
index df7b498d1f..b014a404a6 100644
--- a/gnu/packages/parallel.scm
+++ b/gnu/packages/parallel.scm
@@ -9,7 +9,7 @@
 ;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2018–2022 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org>
-;;; Copyright © 2019-2022 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2019-2023 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2020 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2021 Stefan Reichör <stefan@xsteve.at>
 ;;;
@@ -185,7 +185,7 @@ (define-public xjobs
 (define-public slurm
   (package
     (name "slurm")
-    (version "22.05.1")
+    (version "23.02.6")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -193,7 +193,7 @@ (define-public slurm
                     version ".tar.bz2"))
               (sha256
                (base32
-                "0f3hhlki8g7slllsnyj1qikbsvr62i0hig85lcdcfnmsagzlhbyi"))
+                "08rz3r1rlnb3pmfdnbh542gm44ja0fdy8rkj4vm4lclc48cvqp2a"))
               (modules '((guix build utils)))
               (snippet
                '(begin
@@ -281,6 +281,20 @@ (define-public slurm
 ;; As noted in the link, YY.MM is the release scheme, and the 'maintenance'
 ;; digit does not introduce incompatibilities.
 
+(define-public slurm-22.05
+  (package
+    (inherit slurm)
+    (version "22.05.1")
+    (source (origin
+              (inherit (package-source slurm))
+              (method url-fetch)
+              (uri (string-append
+                    "https://download.schedmd.com/slurm/slurm-"
+                    version ".tar.bz2"))
+              (sha256
+               (base32
+                "0f3hhlki8g7slllsnyj1qikbsvr62i0hig85lcdcfnmsagzlhbyi"))))))
+
 (define-public slurm-21.08
   (package
     (inherit slurm)
-- 
2.41.0

[bug#66573] [PATCH v2.1 04/11] gnu: hwloc: Update to 2.9.3.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.3.
---
 gnu/packages/mpi.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm
index baf6ce11e0..0f2747b499 100644
--- a/gnu/packages/mpi.scm
+++ b/gnu/packages/mpi.scm
@@ -141,7 +141,7 @@ (define-public hwloc-1
 (define-public hwloc-2
   (package
     (inherit hwloc-1)
-    (version "2.9.2")
+    (version "2.9.3")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://download.open-mpi.org/release/hwloc/v"
@@ -149,7 +149,7 @@ (define-public hwloc-2
                                   "/hwloc-" version ".tar.bz2"))
               (sha256
                (base32
-                "1kv0n3b9knb8aawf0hxaxn9wc9bbpwh676r2gmb0pc7qfzvgv1qa"))))
+                "1v0dzzgzp40slakdwdb8vy0hy4m2ff3gnzqpzi8k8vbgap764h2w"))))
 
     ;; libnuma is no longer needed.
     (inputs (modify-inputs (package-inputs hwloc-1)
-- 
2.41.0

[bug#66573] [PATCH v2.1 05/11] gnu: opensm: Update to 3.3.24.

[Ludovic Courtès]

* gnu/packages/fabric-management.scm (opensm): Update to 3.3.24.
---
 gnu/packages/fabric-management.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index 740c570911..ccdaa0ee0a 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -46,7 +46,7 @@ (define-module (gnu packages fabric-management)
 (define-public opensm
   (package
     (name "opensm")
-    (version "3.3.22")
+    (version "3.3.24")
     (source
      (origin
        (method url-fetch)
@@ -54,7 +54,7 @@ (define-public opensm
         (string-append "https://github.com/linux-rdma/opensm/releases/download/"
                        version "/opensm-" version ".tar.gz"))
        (sha256
-        (base32 "19scwwpwqhqsyq4hbr5cflcmypss828lalxxd36yby7mbimca38y"))))
+        (base32 "0q74sx8y23h7picdzb4g5r84wcvc9hr9vzsdawkl812b38vmwcx3"))))
     (build-system gnu-build-system)
     (native-inputs
      (list bison
-- 
2.41.0

[bug#66573] [PATCH v2.1 06/11] gnu: ucx: Update to 1.15.0.

[Ludovic Courtès]

* gnu/packages/fabric-management.scm (ucx): Update to 1.15.0.
* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Update for 1.15.0.
---
 gnu/packages/fabric-management.scm            |   4 +-
 .../patches/ucx-tcp-iface-ioctl.patch         | 105 +++++++++++-------
 2 files changed, 64 insertions(+), 45 deletions(-)

diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index ccdaa0ee0a..f41b4e99ed 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -185,7 +185,7 @@ (define-public ibutils
 (define-public ucx
   (package
     (name "ucx")
-    (version "1.14.0")
+    (version "1.15.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -195,7 +195,7 @@ (define-public ucx
               (patches (search-patches "ucx-tcp-iface-ioctl.patch"))
               (sha256
                (base32
-                "0ki2r768wqm92qv06wxrh3kv2nl2yj4ds9fz0s0b5rr2ycjiw9ir"))))
+                "1mk46vyfp8hsivk88s8gv0nf458jfs59fczpf66wwa3a9yp324jp"))))
     (build-system gnu-build-system)
     (arguments
      (list
diff --git a/gnu/packages/patches/ucx-tcp-iface-ioctl.patch b/gnu/packages/patches/ucx-tcp-iface-ioctl.patch
index c441a0861a..2a0e4ce138 100644
--- a/gnu/packages/patches/ucx-tcp-iface-ioctl.patch
+++ b/gnu/packages/patches/ucx-tcp-iface-ioctl.patch
@@ -3,102 +3,121 @@ TCP network interfaces cannot be obtained via /sys/class/net.  This patch
 provides alternative code that uses the SIOCGIFCONF ioctl to get the
 names of the available TCP network interfaces.
 
+Initially submitted at <https://github.com/openucx/ucx/pull/4462>.
+
 diff --git a/src/uct/tcp/tcp_iface.c b/src/uct/tcp/tcp_iface.c
-index cad4a2709..7c1d2c9de 100644
+index 6a6cd34fa..af32bb2e9 100644
 --- a/src/uct/tcp/tcp_iface.c
 +++ b/src/uct/tcp/tcp_iface.c
-@@ -17,6 +17,8 @@
- #include <sys/poll.h>
+@@ -18,6 +18,8 @@
  #include <netinet/tcp.h>
  #include <dirent.h>
+ #include <float.h>
 +#include <net/if.h>
 +#include <sys/ioctl.h>
  
+ #define UCT_TCP_IFACE_NETDEV_DIR "/sys/class/net"
  
- extern ucs_class_t UCS_CLASS_DECL_NAME(uct_tcp_iface_t);
-@@ -586,6 +588,68 @@ static UCS_CLASS_DEFINE_NEW_FUNC(uct_tcp_iface_t, uct_iface_t, uct_md_h,
+@@ -875,6 +877,85 @@ static UCS_CLASS_DEFINE_NEW_FUNC(uct_tcp_iface_t, uct_iface_t, uct_md_h,
                                   uct_worker_h, const uct_iface_params_t*,
                                   const uct_iface_config_t*);
  
 +/* Fetch information about available network devices through an ioctl.  */
-+static ucs_status_t query_devices_ioctl(uct_md_h md,
-+					uct_tl_device_resource_t **tl_devices_p,
-+					unsigned *num_tl_devices_p)
++static ucs_status_t uct_tcp_query_devices_ioctl(uct_md_h md,
++                                                uct_tl_device_resource_t **devices_p,
++                                                unsigned *num_devices_p)
 +{
 +    int sock, err, i;
-+    uct_tl_device_resource_t *resources, *tmp;
-+    unsigned num_resources;
++    uct_tl_device_resource_t *devices, *tmp;
++    unsigned num_devices;
 +    ucs_status_t status;
 +    struct ifconf conf;
-+    struct ifreq reqs[10];
 +
-+    conf.ifc_len = sizeof reqs;
-+    conf.ifc_req = reqs;
++    conf.ifc_len = 0;
++    conf.ifc_req = NULL;
 +
-+    sock = socket(SOCK_STREAM, AF_INET, 0);
-+    if (sock < 0) {
-+	ucs_error("socket(2) failed: %m");
-+	status = UCS_ERR_IO_ERROR;
-+	goto out;
++    status = ucs_socket_create(AF_INET, SOCK_STREAM, &sock);
++    if (status != UCS_OK) {
++        goto out;
 +    }
 +
 +    err = ioctl(sock, SIOCGIFCONF, &conf);
 +    if (err < 0) {
-+	ucs_error("SIOCGIFCONF ioctl failed: %m");
-+	status = UCS_ERR_IO_ERROR;
-+	goto out;
++        ucs_error("ioctl(SIOCGIFCONF) failed: %m");
++        status = UCS_ERR_IO_ERROR;
++        goto out;
 +    }
 +
-+    resources     = NULL;
-+    num_resources = 0;
-+    for (i = 0; i < conf.ifc_len / sizeof(struct ifreq); i++) {
-+	const char *name = reqs[i].ifr_name;
++    conf.ifc_req = ucs_calloc(1, conf.ifc_len, "ifreq");
++    if (conf.ifc_req == NULL) {
++        ucs_error("memory alocation failed");
++        status = UCS_ERR_NO_MEMORY;
++        goto out;
++    }
++
++    err = ioctl(sock, SIOCGIFCONF, &conf);
++    if (err < 0) {
++        ucs_error("ioctl(SIOCGIFCONF) failed: %m");
++        status = UCS_ERR_IO_ERROR;
++        goto out_free;
++    }
++
++    devices     = NULL;
++    num_devices = 0;
++    for (i = 0; i < (conf.ifc_len / sizeof(struct ifreq)); i++) {
++        const char *name = conf.ifc_req[i].ifr_name;
++	sa_family_t family = conf.ifc_req[i].ifr_addr.sa_family;
 +
-+        if (!ucs_netif_is_active(name, AF_INET)) {
++        if (!ucs_netif_is_active(name, family)) {
 +            continue;
 +        }
 +
-+        tmp = ucs_realloc(resources, sizeof(*resources) * (num_resources + 1),
-+                          "tcp resources");
++        tmp = ucs_realloc(devices, sizeof(*devices) * (num_devices + 1),
++                          "tcp devices");
 +        if (tmp == NULL) {
-+            ucs_free(resources);
++            ucs_free(devices);
 +            status = UCS_ERR_NO_MEMORY;
-+            goto out;
++            goto out_free;
 +        }
-+        resources = tmp;
++        devices = tmp;
 +
-+        ucs_snprintf_zero(resources[i].name, sizeof(resources[i].name),
++        ucs_snprintf_zero(devices[num_devices].name,
++                          sizeof(devices[num_devices].name),
 +                          "%s", name);
-+        resources[i].type = UCT_DEVICE_TYPE_NET;
-+        ++num_resources;
++        devices[num_devices].type = UCT_DEVICE_TYPE_NET;
++        ++num_devices;
 +    }
 +
-+    *num_tl_devices_p = num_resources;
-+    *tl_devices_p     = resources;
-+    status            = UCS_OK;
++    *num_devices_p = num_devices;
++    *devices_p     = devices;
++    status         = UCS_OK;
 +
++out_free:
++    ucs_free(conf.ifc_req);
 +out:
-+    if (sock >= 0) close(sock);
++    if (sock >= 0) {
++        close(sock);
++    }
 +    return status;
 +}
 +
  ucs_status_t uct_tcp_query_devices(uct_md_h md,
                                     uct_tl_device_resource_t **devices_p,
                                     unsigned *num_devices_p)
-@@ -599,9 +663,9 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
+@@ -893,9 +974,9 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
  
      dir = opendir(UCT_TCP_IFACE_NETDEV_DIR);
      if (dir == NULL) {
 -        ucs_error("opendir(%s) failed: %m", UCT_TCP_IFACE_NETDEV_DIR);
 -        status = UCS_ERR_IO_ERROR;
 -        goto out;
-+	/* When /sys is unavailable, as can be the case in a container,
-+	 * resort to a good old 'ioctl'.  */
-+	return query_devices_ioctl(md, devices_p, num_devices_p);
++        /* When /sys is unavailable, as can be the case in a container,
++         * resort to a good old 'ioctl'.  */
++        return uct_tcp_query_devices_ioctl(md, devices_p, num_devices_p);
      }
  
      devices     = NULL;
-@@ -655,7 +719,6 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
+@@ -963,7 +1044,6 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
  
  out_closedir:
      closedir(dir);
-- 
2.41.0

[bug#66573] [PATCH v2.1 07/11] gnu: rdma-core: Update to 48.0.

[Ludovic Courtès]

* gnu/packages/linux.scm (rdma-core): Update to 48.0.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index f02577d2d5..cbacb15824 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -6716,7 +6716,7 @@ (define-public ntfsfix/static
 (define-public rdma-core
   (package
     (name "rdma-core")
-    (version "44.0")
+    (version "48.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/linux-rdma/rdma-core"
@@ -6724,7 +6724,7 @@ (define-public rdma-core
                                   version ".tar.gz"))
               (sha256
                (base32
-                "12w5v74wz1akac09frw7qk1yd06b00239zh7bvbvqyzjc0g61mi5"))))
+                "0h281dw2yph8pzfsr1wblqy6pb8nd9yj1pdf5c62zwc1l9b2fa3q"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f                      ;no tests
-- 
2.41.0

[bug#66573] [PATCH v2.1 08/11] gnu: libfabric: Update to 1.19.0.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/linux.scm (libfabric): Update to 1.19.0.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index cbacb15824..d45727ce5d 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -8539,7 +8539,7 @@ (define-public procenv
 (define-public libfabric
   (package
     (name "libfabric")
-    (version "1.11.2")
+    (version "1.19.0")
     (source
      (origin
        (method url-fetch)
@@ -8547,7 +8547,7 @@ (define-public libfabric
         (string-append "https://github.com/ofiwg/libfabric/releases/download/v"
                        version "/libfabric-" version ".tar.bz2"))
        (sha256
-        (base32 "1nnpfkwxhim2nqjkb1vwrb4wj4j3l6w6yvvy69fqam2snlhshazz"))))
+        (base32 "17pg0fb4fa77r1bmp0xk535m8n8fadpfdg93cb280ghhx55pck7i"))))
     (build-system gnu-build-system)
     (inputs `(("rdma-core" ,rdma-core)
               ,@(match (%current-system)
-- 
2.41.0

[bug#66573] [PATCH v2.1 09/11] gnu: psm2: Update to 12.0.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/linux.scm (psm2): Update to 12.0.
---
 gnu/packages/linux.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index d45727ce5d..d694e280f4 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -8828,7 +8828,7 @@ (define-public mbpfan
 (define-public psm2
   (package
     (name "psm2")
-    (version "11.2.230")
+    (version "12.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -8837,7 +8837,7 @@ (define-public psm2
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1bm7ndhi8qzmd0plnggj2h52yb34bab4k38530nsnkmv9smwdivl"))))
+                "04nar65ac11qqx41vkfs7iip8kfiah0zms7l4rmsxncpiz2iqfik"))))
     (build-system gnu-build-system)
     (arguments
      (list #:make-flags
-- 
2.41.0

[bug#66573] [PATCH v2.1 10/11] gnu: openmpi: Update to 4.1.6.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/mpi.scm (openmpi): Update to 4.1.6.
---
 gnu/packages/mpi.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm
index 0f2747b499..85afc8cefc 100644
--- a/gnu/packages/mpi.scm
+++ b/gnu/packages/mpi.scm
@@ -184,7 +184,7 @@ (define-public hwloc
 (define-public openmpi
   (package
     (name "openmpi")
-    (version "4.1.5")
+    (version "4.1.6")
     (source
      (origin
        (method url-fetch)
@@ -192,7 +192,7 @@ (define-public openmpi
                            (version-major+minor version)
                            "/downloads/openmpi-" version ".tar.bz2"))
        (sha256
-        (base32 "1qyvc77diyrxmviirdwqpibgm32c4vkdlvw8g79rsf2pq9mrhh56"))
+        (base32 "05g4245v0pdqcyjmgn50519ry5v5q8ig26iinmiynvaihm29jh7p"))
        (patches (search-patches "openmpi-mtl-priorities.patch"))))
 
     (properties
-- 
2.41.0

[bug#66573] [PATCH v2.1 11/11] gnu: intel-mpi-benchmarks: Update to 2021.3.

[Ludovic Courtès]

From: Ludovic Courtès <ludovic.courtes@inria.fr>

* gnu/packages/benchmark.scm (intel-mpi-benchmarks/openmpi): Update to
2021.3.
---
 gnu/packages/benchmark.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/benchmark.scm b/gnu/packages/benchmark.scm
index 4d92457e59..08fece6e91 100644
--- a/gnu/packages/benchmark.scm
+++ b/gnu/packages/benchmark.scm
@@ -137,7 +137,7 @@ (define-public fio
 (define-public intel-mpi-benchmarks/openmpi
   (package
     (name "intel-mpi-benchmarks")
-    (version "2019.6")
+    (version "2021.3")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -146,7 +146,7 @@ (define-public intel-mpi-benchmarks/openmpi
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "02hxbk9g9nl59bk5qcfl3djj7b58vsqys340m1xdbyqwcrbnahh9"))
+                "04kczch2hlfzbgk929vcxx480kc6raba8rbz246j7d26k1z1zh8h"))
               (modules '((guix build utils)))
               (snippet
                '(begin
-- 
2.41.0

[bug#66573] [PATCH 00/11] Update Open MPI and its dependencies

[Ludovic Courtès]

Hello,

Ludovic Courtès <ludo@gnu.org> skribis:

>   gnu: opensm: Use the right version string for the doc directory.
>   gnu: opensm: Use gexps.
>   gnu: slurm: Add 23.02.6.
>   gnu: hwloc: Update to 2.9.3.
>   gnu: opensm: Update to 3.3.24.
>   gnu: ucx: Update to 1.15.0.
>   gnu: rdma-core: Update to 48.0.
>   gnu: libfabric: Update to 1.19.0.
>   gnu: psm2: Update to 12.0.
>   gnu: openmpi: Update to 4.1.6.
>   gnu: intel-mpi-benchmarks: Update to 2021.3.

Frustrated by the slow response of qa.guix, I pushed a
‘wip-openmpi-upgrade’ branch, got it built at
<https://guix.bordeaux.inria.fr/jobset/openmpi-upgrade> for x86_64
overnight, and pushed it to ‘master’ as
f8cad886153f4c0fa96d50e497eec5f00279f0d5 after noticing there were no
regressions.

I think we should strive to provide quick response on qa.guix, even if
that means cutting on some checks to save computing resources.  Perhaps
instead of green/grey/red, we need something more progressive.  Dunno!

Ludo’.

[bug#66573] [PATCH 00/11] Update Open MPI and its dependencies

[Guillaume Le Vaillant]

[-- Attachment #1: Type: text/plain, Size: 1782 bytes --]

Ludovic Courtès <ludo@gnu.org> skribis:

> Hello,
>
> Ludovic Courtès <ludo@gnu.org> skribis:
>
>>   gnu: opensm: Use the right version string for the doc directory.
>>   gnu: opensm: Use gexps.
>>   gnu: slurm: Add 23.02.6.
>>   gnu: hwloc: Update to 2.9.3.
>>   gnu: opensm: Update to 3.3.24.
>>   gnu: ucx: Update to 1.15.0.
>>   gnu: rdma-core: Update to 48.0.
>>   gnu: libfabric: Update to 1.19.0.
>>   gnu: psm2: Update to 12.0.
>>   gnu: openmpi: Update to 4.1.6.
>>   gnu: intel-mpi-benchmarks: Update to 2021.3.
>
> Frustrated by the slow response of qa.guix, I pushed a
> ‘wip-openmpi-upgrade’ branch, got it built at
> <https://guix.bordeaux.inria.fr/jobset/openmpi-upgrade> for x86_64
> overnight, and pushed it to ‘master’ as
> f8cad886153f4c0fa96d50e497eec5f00279f0d5 after noticing there were no
> regressions.
>
> I think we should strive to provide quick response on qa.guix, even if
> that means cutting on some checks to save computing resources.  Perhaps
> instead of green/grey/red, we need something more progressive.  Dunno!
>
> Ludo’.

Hi.
I can't build the updated psm2. There's an error with the git checkout:

--8<---------------cut here---------------start------------->8---
building /gnu/store/ws9m70k8rq78hc6ywpjzh54f69hjfr5g-psm2-12.0-checkout.drv...
Initialized empty Git repository in /gnu/store/m03npw5b871r4kb7c0hlv3bm1sl6lki3-psm2-12.0-checkout/.git/
fatal: couldn't find remote ref PSM2_12.0
[...]
error: pathspec 'PSM2_12.0' did not match any file(s) known to git
[...]
build of
/gnu/store/ws9m70k8rq78hc6ywpjzh54f69hjfr5g-psm2-12.0-checkout.drv failed
--8<---------------cut here---------------end--------------->8---

This blocks <https://issues.guix.gnu.org/67151> to update kicad.

[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 247 bytes --]

[bug#66573] [PATCH 00/11] Update Open MPI and its dependencies

[Ludovic Courtès]

Hi,

Guillaume Le Vaillant <glv@posteo.net> skribis:

> I can't build the updated psm2. There's an error with the git checkout:
>
> building /gnu/store/ws9m70k8rq78hc6ywpjzh54f69hjfr5g-psm2-12.0-checkout.drv...
> Initialized empty Git repository in /gnu/store/m03npw5b871r4kb7c0hlv3bm1sl6lki3-psm2-12.0-checkout/.git/
> fatal: couldn't find remote ref PSM2_12.0

Sorry about that; fixed in 26a403f357f4471b14db7f01bb83a4c36ca5ef1b.

Thanks,
Ludo’.

[bug#66573] [PATCH 00/11] Update Open MPI and its dependencies

[Guillaume Le Vaillant]

[-- Attachment #1: Type: text/plain, Size: 538 bytes --]

Ludovic Courtès <ludo@gnu.org> skribis:

> Hi,
>
> Guillaume Le Vaillant <glv@posteo.net> skribis:
>
>> I can't build the updated psm2. There's an error with the git checkout:
>>
>> building /gnu/store/ws9m70k8rq78hc6ywpjzh54f69hjfr5g-psm2-12.0-checkout.drv...
>> Initialized empty Git repository in /gnu/store/m03npw5b871r4kb7c0hlv3bm1sl6lki3-psm2-12.0-checkout/.git/
>> fatal: couldn't find remote ref PSM2_12.0
>
> Sorry about that; fixed in 26a403f357f4471b14db7f01bb83a4c36ca5ef1b.
>
> Thanks,
> Ludo’.

Thanks!

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