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dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=TldhiV8h; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-TUID: UOE6DaqRveAX * gnu/packages/bioinformatics.scm (python-rseqc): New variable. --- gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b27e12a5b4..ecc1815539 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3060,6 +3060,30 @@ (define-public python-pysam also includes an interface for tabix.") (license license:expat))) +(define-public python-rseqc + (package + (name "python-rseqc") + (version "5.0.1") + (source (origin + (method url-fetch) + (uri (pypi-uri "RSeQC" version)) + (sha256 + (base32 + "106av4ms6agrfjdlw5j3fsrk86clr0f4ygysv19g66l6hj3laz9w")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-bx-python python-numpy python-pybigwig + python-pysam)) + (native-inputs (list python-cython python-nose)) + (home-page "https://github.com/MonashBioinformaticsPlatform/RSeQC") + (synopsis "RNA-seq quality control packag") + (description + "Useful modules that can comprehensively evaluate high throughput sequence data. +Some basic modules quickly inspect sequence, quality, nucleotide composition bias, +PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation, +mapped reads distribution, coverage uniformity, strand specificity, transcript level +RNA integrity and etc.") + (license license:gpl3))) + (define-public python-twobitreader (package (name "python-twobitreader") -- 2.34.1