* [bug#62187] [PATCH 1/2] gnu: Add r-premessa.
@ 2023-03-14 15:01 Navid Afkhami
2023-03-14 15:01 ` [bug#62186] [PATCH 2/2] gnu: Add r-rhandsontable Navid Afkhami
2023-03-14 18:13 ` bug#62187: [PATCH 1/2] gnu: Add r-premessa Ricardo Wurmus
0 siblings, 2 replies; 4+ messages in thread
From: Navid Afkhami @ 2023-03-14 15:01 UTC (permalink / raw)
To: 62187; +Cc: Navid Afkhami
* gnu/packages/bioinformatics.scm (r-premessa): New variable.
---
gnu/packages/bioinformatics.scm | 37 +++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 06f9eb8ee3..7025ccd93d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8803,6 +8803,43 @@ (define-public r-pando
regions for each transcription factor.")
(license license:expat)))
+(define-public r-premessa
+ (let ((commit "68b42bb984637d0f3ad6a0ecc83e9278994afc85")
+ (revision "1"))
+ (package
+ (name "r-premessa")
+ (version (git-version "0.3.4" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ParkerICI/premessa")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1l0q431zk0lvg22130nx84gdqi7cpl05yah4am63lbx6m4c769pb"))))
+ (properties `((upstream-name . "premessa")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-data-table
+ r-flowcore
+ r-ggplot2
+ r-gridextra
+ r-hexbin
+ r-jsonlite
+ r-reshape
+ r-rhandsontable
+ r-shiny
+ r-shinyjqui))
+ (native-inputs (list esbuild))
+ (home-page "https://github.com/ParkerICI/premessa")
+ (synopsis
+ "This package is for pre-processing of flow and mass cytometry data")
+ (description
+ "This is an R package for pre-processing of flow and mass cytometry data.
+This package includes panel editing or renaming for FCS files, bead-based
+normalization and debarcoding.")
+ (license license:gpl3))))
+
(define-public r-presto
(let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
(revision "0"))
--
2.34.1
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [bug#62186] [PATCH 2/2] gnu: Add r-rhandsontable.
2023-03-14 15:01 [bug#62187] [PATCH 1/2] gnu: Add r-premessa Navid Afkhami
@ 2023-03-14 15:01 ` Navid Afkhami
2023-03-14 16:48 ` bug#62186: " Ricardo Wurmus
2023-03-14 18:13 ` bug#62187: [PATCH 1/2] gnu: Add r-premessa Ricardo Wurmus
1 sibling, 1 reply; 4+ messages in thread
From: Navid Afkhami @ 2023-03-14 15:01 UTC (permalink / raw)
To: 62186; +Cc: Navid Afkhami
* gnu/packages/bioinformatics.scm (r-rhandsontable): New variable.
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7025ccd93d..bc5da864bf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -827,6 +827,30 @@ (define-public r-rhtslib12
developers of other R packages who wish to make use of HTSlib.")
(license license:lgpl2.0+))))
+(define-public r-rhandsontable
+ (package
+ (name "r-rhandsontable")
+ (version "0.3.8")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "rhandsontable" version))
+ (sha256
+ (base32
+ "07fj6npq65pq836vdwblkhprdaq4i4f13cwdmm9gmxrnk72xj7lh"))))
+ (properties `((upstream-name . "rhandsontable")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-htmlwidgets r-jsonlite r-magrittr))
+ (native-inputs (list esbuild r-knitr))
+ (home-page "http://jrowen.github.io/rhandsontable/")
+ (synopsis
+ "This package is a htmlwidget based on the handsontable.js library")
+ (description
+ "Handsontable is a data grid component with an Excel like appearance.
+Built in JavaScript, it integrates with any data source with peak efficiency.
+It comes with powerful features like data validation, sorting, grouping,
+data binding, formula support or column ordering.")
+ (license license:expat)))
+
(define-public r-stringendo
(let ((commit "83b8f2d82a09b33b9e895438bb523a021138be01")
(revision "1"))
--
2.34.1
^ permalink raw reply related [flat|nested] 4+ messages in thread
* bug#62186: [PATCH 2/2] gnu: Add r-rhandsontable.
2023-03-14 15:01 ` [bug#62186] [PATCH 2/2] gnu: Add r-rhandsontable Navid Afkhami
@ 2023-03-14 16:48 ` Ricardo Wurmus
0 siblings, 0 replies; 4+ messages in thread
From: Ricardo Wurmus @ 2023-03-14 16:48 UTC (permalink / raw)
To: 62186-done
This one was tricky.
The package bundles minified JavaScript which we need to build from
source. I tracked down all JavaScript source files, added them to the
native inputs, and added a build phase to process them all.
Commit 27c8ab4bf35a915a38dae574c6212e7dcbfd15dc shows the result.
--
Ricardo
^ permalink raw reply [flat|nested] 4+ messages in thread
* bug#62187: [PATCH 1/2] gnu: Add r-premessa.
2023-03-14 15:01 [bug#62187] [PATCH 1/2] gnu: Add r-premessa Navid Afkhami
2023-03-14 15:01 ` [bug#62186] [PATCH 2/2] gnu: Add r-rhandsontable Navid Afkhami
@ 2023-03-14 18:13 ` Ricardo Wurmus
1 sibling, 0 replies; 4+ messages in thread
From: Ricardo Wurmus @ 2023-03-14 18:13 UTC (permalink / raw)
To: 62187-done
Pushed with commit 204c51cac44809dc352c86bb33332fc75e2b0056.
I had to replace the bundled d3.min.js with a variant built from source.
Note that this is why the importer added esbuild (a JS compiler/bundler)
to the native inputs.
--
Ricardo
^ permalink raw reply [flat|nested] 4+ messages in thread
end of thread, other threads:[~2023-03-14 18:14 UTC | newest]
Thread overview: 4+ messages (download: mbox.gz follow: Atom feed
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2023-03-14 15:01 [bug#62187] [PATCH 1/2] gnu: Add r-premessa Navid Afkhami
2023-03-14 15:01 ` [bug#62186] [PATCH 2/2] gnu: Add r-rhandsontable Navid Afkhami
2023-03-14 16:48 ` bug#62186: " Ricardo Wurmus
2023-03-14 18:13 ` bug#62187: [PATCH 1/2] gnu: Add r-premessa Ricardo Wurmus
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