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Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 03 Mar 2023 13:08:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61933 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61933@debbugs.gnu.org> Cc: Navid Afkhami Received: via spool by 61933-submit@debbugs.gnu.org id=B61933.167784886629311 (code B ref 61933); Fri, 03 Mar 2023 13:08:03 +0000 Received: (at 61933) by debbugs.gnu.org; 3 Mar 2023 13:07:46 +0000 Received: from localhost ([127.0.0.1]:59902 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pY58U-0007cb-FL for submit@debbugs.gnu.org; Fri, 03 Mar 2023 08:07:46 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:37795) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pY58S-0007bN-4z for 61933@debbugs.gnu.org; Fri, 03 Mar 2023 08:07:44 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1677848857; x=1679663258; bh=LFBrLxz02b5AxLFB+ZtkY/v2ebXtcdexIZZknQKjeUA=; b=ProMa6HfHV0k 9xcqLSehWNOVNyKdxkuVWVM9Q3lbxG8VHNt6zUwquR6zjK4NqHFX/+PsZt/t/auh x/40L+VjS9pVbDS2Grxe0Cz5ug+DxBqSof2n5dHkAI3P1UDVIgE0edrlSr2W3lyS YHMGZfLBXdv9YAiswEnuMYtyu603bSI= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id C8EBB30034E for <61933@debbugs.gnu.org>; Fri, 3 Mar 2023 14:07:37 +0100 (CET) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Fri, 3 Mar 2023 14:07:37 +0100 From: Navid Afkhami Date: Fri, 3 Mar 2023 13:07:20 +0000 Message-ID: <20230303130723.88484-6-navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 In-Reply-To: <20230303130723.88484-1-navid.afkhami@mdc-berlin.de> References: <20230303130723.88484-1-navid.afkhami@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27480.007 X-TM-AS-Result: No-10--2.134200-5.000000 X-TMASE-MatchedRID: a3KJLn6RIiJ6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VNnf JrUSEbFDLy10jRvW6qQue6riVYm/hx1hN+DNBjvOa87CDXaKRVILwteD+QnyUBHfiujuTbed7Sc dpy2ZKwKGctMEqTuN+rSIRR31JzPS27YWB4baXJJvwVJGkXUdCaVjgXyvS9c/Z42Lekd+hLkjL8 WDWZGeoqEbr6VH4TuZmyiLZetSf8mfop0ytGwvXiq2rl3dzGQ1GpeevGsoI5dl8TNqkmhnNjhB+ XA20GV1qbTpLIqZdxN3J/sTLfOeob87ibF3A0IVtnJBdVCYm6dubTrypg7VmbKqVLhqlFopNzfU ipEs8Mbox9rqorLqIj47jot1RqlnCuhB+Hs2Q+XFRuRzIFoKqH7cGd19dSFd X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.134200-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27480.007 X-TM-SNTS-SMTP: F8E56468D5DE4A5FFCE99B03D490CFF8F807E48D7EC7720A6B229DB5E7E0CA942002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: X-Migadu-Spam-Score: -0.10 X-Spam-Score: -0.10 X-Migadu-Scanner: scn0.migadu.com X-Migadu-Queue-Id: 390A81775C List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN X-TUID: TqWXfrKg5XBd * gnu/packages/bioinformatics.scm (r-ggexpress): New variable. --- gnu/packages/bioinformatics.scm | 37 +++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b311ec6c33..14efaa9570 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8302,6 +8302,43 @@ (define-public infernal (supported-systems '("i686-linux" "x86_64-linux")) (license license:bsd-3))) +(define-public r-ggexpress + (let ((commit "82f169385f87af328ff971195c2f64ff3c573a8a") + (revision "1")) + (package + (name "r-ggexpress") + (version (git-version "0.6.6" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/vertesy/ggExpress") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "122hnw8xv33ngcd4fd7hmf817a06ih1knrxxi0cgklj1fwinm0z4")))) + (properties `((upstream-name . "ggExpress"))) + (build-system r-build-system) + (propagated-inputs (list r-cowplot + r-ggplot2 + r-ggpubr + r-markdownhelpers + r-markdownreports + r-rcolorbrewer + r-sessioninfo + r-seurat + r-sm + r-stringendo + r-tidyverse)) + (home-page "https://github.com/vertesy/ggExpress") + (synopsis + "This is a fast tool to create, annotate and export plots in R") + (description + "This package is a set of R functions for generating precise figures. +This tool helps you to create clean markdown reports about what you just +discovered with your analysis script.") + (license license:gpl3)))) + (define-public r-gg3d (let ((commit "ffdd837d30c1671cd0895db94bdd7b1594dbfcb0") (revision "1")) -- 2.34.1