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(license license:artistic2.0))) +(define-public r-oscope + (let ((commit "32e0ea72236128731f35a60fb5abcde5b5d35433") + (revision "1")) + (package + (name "r-oscope") + (version (git-version "1.29.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://git.bioconductor.org/packages/Oscope") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "02929i7zd4fwdhxi0h2i7y3sn6v1k3srahn5a6v9wvihp5nmgcig")))) + (properties `((upstream-name . "Oscope"))) + (build-system r-build-system) + (propagated-inputs (list r-biocparallel r-cluster r-ebseq r-testthat)) + (home-page "https://git.bioconductor.org/packages/Oscope") + (synopsis + "Oscillatory genes identifier in unsynchronized single cell RNA-seq") + (description + "Oscope is a oscillatory genes identifier in unsynchronized single cell RNA-seq. +This statistical pipeline has been developed to identify and recover the +base cycle profiles of oscillating genes in an unsynchronized single cell +RNA-seq experiment. The Oscope pipeline includes three modules: a sine model +module to search for candidate oscillator pairs; a K-medoids clustering module +to cluster candidate oscillators into groups; and an extended nearest insertion +module to recover the base cycle order for each oscillator group.") + (license license:asl2.0)))) + (define-public r-parathyroidse (package (name "r-parathyroidse") -- 2.34.1