From: Simon Tournier <zimon.toutoune@gmail.com>
To: 60885@debbugs.gnu.org
Cc: Simon Tournier <zimon.toutoune@gmail.com>
Subject: [bug#60885] [PATCH 0/4] Some bioinfo packages
Date: Tue, 17 Jan 2023 18:26:50 +0100 [thread overview]
Message-ID: <20230117172650.1849207-1-zimon.toutoune@gmail.com> (raw)
Hi,
Here some pacakages used in Bioinformatics.
Note that the package numbat comes with 'bin/pileup_and_phase.R' for preparing
the data, as explained in online documentation [1].
Here, this script goes under 'site-library/numbat/bin' which does not
perfectly match the online documentation mentioning 'numbat/inst/bin/'
instead.
1: https://kharchenkolab.github.io/numbat/articles/numbat.html
Cheers,
simon
Simon Tournier (4):
gnu: Add python-vireosnp.
gnu: Add r-scistreer.
gnu: Add r-roptim.
gnu: Add r-numbat.
gnu/packages/bioconductor.scm | 106 +++++++++++++++++++++++++++++++-
gnu/packages/bioinformatics.scm | 22 +++++++
gnu/packages/cran.scm | 23 ++++++-
3 files changed, 149 insertions(+), 2 deletions(-)
base-commit: ecda67a577570f412b103e5dd8ed1a44193a9c11
--
2.38.1
next reply other threads:[~2023-01-17 17:28 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-01-17 17:26 Simon Tournier [this message]
2023-01-17 17:30 ` [bug#60885] [PATCH 1/4] gnu: Add python-vireosnp Simon Tournier
2023-01-17 17:30 ` [bug#60885] [PATCH 2/4] gnu: Add r-scistreer Simon Tournier
2023-01-17 17:30 ` [bug#60885] [PATCH 3/4] gnu: Add r-roptim Simon Tournier
2023-01-17 17:30 ` [bug#60885] [PATCH 4/4] gnu: Add r-numbat Simon Tournier
2023-01-20 9:56 ` bug#60885: [PATCH 0/4] Some bioinfo packages Ricardo Wurmus
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