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From: Simon Tournier <zimon.toutoune@gmail.com>
To: 60885@debbugs.gnu.org
Cc: Simon Tournier <zimon.toutoune@gmail.com>
Subject: [bug#60885] [PATCH 0/4] Some bioinfo packages
Date: Tue, 17 Jan 2023 18:26:50 +0100	[thread overview]
Message-ID: <20230117172650.1849207-1-zimon.toutoune@gmail.com> (raw)

Hi,

Here some pacakages used in Bioinformatics.

Note that the package numbat comes with 'bin/pileup_and_phase.R' for preparing
the data, as explained in online documentation [1].

Here, this script goes under 'site-library/numbat/bin' which does not
perfectly match the online documentation mentioning 'numbat/inst/bin/'
instead.

1: https://kharchenkolab.github.io/numbat/articles/numbat.html

Cheers,
simon

Simon Tournier (4):
  gnu: Add python-vireosnp.
  gnu: Add r-scistreer.
  gnu: Add r-roptim.
  gnu: Add r-numbat.

 gnu/packages/bioconductor.scm   | 106 +++++++++++++++++++++++++++++++-
 gnu/packages/bioinformatics.scm |  22 +++++++
 gnu/packages/cran.scm           |  23 ++++++-
 3 files changed, 149 insertions(+), 2 deletions(-)


base-commit: ecda67a577570f412b103e5dd8ed1a44193a9c11
-- 
2.38.1





             reply	other threads:[~2023-01-17 17:28 UTC|newest]

Thread overview: 6+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-01-17 17:26 Simon Tournier [this message]
2023-01-17 17:30 ` [bug#60885] [PATCH 1/4] gnu: Add python-vireosnp Simon Tournier
2023-01-17 17:30   ` [bug#60885] [PATCH 2/4] gnu: Add r-scistreer Simon Tournier
2023-01-17 17:30   ` [bug#60885] [PATCH 3/4] gnu: Add r-roptim Simon Tournier
2023-01-17 17:30   ` [bug#60885] [PATCH 4/4] gnu: Add r-numbat Simon Tournier
2023-01-20  9:56 ` bug#60885: [PATCH 0/4] Some bioinfo packages Ricardo Wurmus

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