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From: Ricardo Wurmus <rekado@elephly.net>
To: 60009@debbugs.gnu.org
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: [bug#60009] [PATCH 03/18] gnu: python-biopython: Update to 1.80.
Date: Mon, 12 Dec 2022 15:27:01 +0100	[thread overview]
Message-ID: <20221212142716.9460-3-rekado@elephly.net> (raw)
In-Reply-To: <20221212142716.9460-1-rekado@elephly.net>

* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.80.
[build-system]: Use pyproject-build-system.
[arguments]: Remove trailing #T from build phase.
---
 gnu/packages/bioinformatics.scm | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 207f3c3d28..52abe152ee 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1237,21 +1237,21 @@ (define-public perl-bio-db-hts
 (define-public python-biopython
   (package
     (name "python-biopython")
-    (version "1.76")
+    (version "1.80")
     (source (origin
               (method url-fetch)
               ;; use PyPi rather than biopython.org to ease updating
               (uri (pypi-uri "biopython" version))
               (sha256
                (base32
-                "0wlch9xpa0fpgjzyxi6jsfca6iakaq9a05927xg8vqnmvaccnwrq"))))
-    (build-system python-build-system)
+                "0hqf3jsxn2sphcx81fx7x3i69sarpjsi70fzw98f8rw7z2d5x02j"))))
+    (build-system pyproject-build-system)
     (arguments
-     `(#:phases
+     '(#:phases
        (modify-phases %standard-phases
          (add-before 'check 'set-home
            ;; Some tests require a home directory to be set.
-           (lambda _ (setenv "HOME" "/tmp") #t)))))
+           (lambda _ (setenv "HOME" "/tmp"))))))
     (propagated-inputs
      (list python-numpy))
     (home-page "https://biopython.org/")
-- 
2.36.1





  parent reply	other threads:[~2022-12-12 14:30 UTC|newest]

Thread overview: 29+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2022-12-12 14:22 [bug#60009] Update python-graphviz and other Python updates Ricardo Wurmus
2022-12-12 14:26 ` [bug#60009] [PATCH 01/18] gnu: python-graphviz: Update to 0.20.1 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 02/18] gnu: python-hyperopt: Update to 0.2.7 Ricardo Wurmus
2022-12-12 14:27   ` Ricardo Wurmus [this message]
2022-12-12 14:27   ` [bug#60009] [PATCH 04/18] gnu: python-hicmatrix: Update to 16 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 05/18] gnu: python-pygenometracks: Update to 3.5 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 06/18] gnu: python-hicexplorer: Update to 3.7.2 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 07/18] gnu: python-dna-features-viewer: Update to 3.1.1 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 08/18] gnu: python-bokeh: Skip failing PIL test Ricardo Wurmus
2022-12-12 19:10     ` zimoun
2022-12-12 20:09       ` Ricardo Wurmus
2022-12-12 20:37         ` Simon Tournier
2022-12-12 23:06           ` Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 09/18] gnu: sqlite-next: Update to 3.40.0 Ricardo Wurmus
2022-12-12 19:08     ` zimoun
2022-12-12 20:11       ` Ricardo Wurmus
2022-12-12 20:56         ` Simon Tournier
2022-12-12 23:02           ` Ricardo Wurmus
2022-12-12 23:21             ` Simon Tournier
2022-12-12 23:26               ` bug#60009: " Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 10/18] gnu: python-apsw: Update to 3.40.0.0 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 11/18] gnu: python-cgatcore: Update to 0.6.14 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 12/18] gnu: python-flask-restful: Update to 0.3.9 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 13/18] gnu: python-marshmallow: Update to 3.19.0 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 14/18] gnu: python-apispec: Update to 6.0.2 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 15/18] gnu: python-pyjwt: Update to 2.6.0 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 16/18] gnu: python-flasgger: Update to 0.9.5 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 17/18] gnu: seqmagick: Update to 0.8.4 Ricardo Wurmus
2022-12-12 14:27   ` [bug#60009] [PATCH 18/18] gnu: cnvkit: Update to 0.9.9 Ricardo Wurmus

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