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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=ffoaKeZI; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 8.64 X-Spam: Yes Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=ffoaKeZI; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 926C3ED85 X-Spam-Score: 8.64 X-Migadu-Spam: Yes X-Migadu-Scanner: scn1.migadu.com X-TUID: 0z+XvAPFI7aj * gnu/packages/bioconductor.scm (r-wpm): New variable. --- gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index c62c5970b8..21b69cab01 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -12244,6 +12244,48 @@ (define-public r-wppi scores and a path search algorithm.") (license license:expat))) +(define-public r-wpm + (package + (name "r-wpm") + (version "1.8.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "wpm" version)) + (sha256 + (base32 + "05zpj0i4741xn1g0yhkq3mg9zjppfryrfc47pxnys9bjfij0az52")))) + (properties `((upstream-name . "wpm"))) + (build-system r-build-system) + (propagated-inputs + (list r-biobase + r-cli + r-config + r-dplyr + r-dt + r-ggplot2 + r-golem + r-logging + r-rcolorbrewer + r-rlang + r-shiny + r-shinycustomloader + r-shinydashboard + r-shinywidgets + r-stringr + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/HelBor/wpm") + (synopsis "Generating well plate maker") + (description + "The @acronym{WPM, Well-Plate Maker} is a Shiny application deployed as an +R package. Functions for a command-line/script use are available. The WPM allows +users to generate well plate maps to carry out their experiments while improving +the handling of batch effects. In particular, it helps controlling the \"plate +effect\" thanks to its ability to randomize samples over multiple well plates. +The algorithm for placing the samples is inspired by the backtracking algorithm: +the samples are placed at random while respecting specific spatial constraints.") + (license license:artistic2.0))) + (define-public r-wrench (package (name "r-wrench") -- 2.38.1