From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp10.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms5.migadu.com with LMTPS id eHYXIs85kmNXQwAAbAwnHQ (envelope-from ) for ; Thu, 08 Dec 2022 20:23:59 +0100 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp10.migadu.com with LMTPS id 4M5DIc85kmNsMgEAG6o9tA (envelope-from ) for ; Thu, 08 Dec 2022 20:23:59 +0100 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 5A04FB5A7 for ; Thu, 8 Dec 2022 20:23:59 +0100 (CET) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1p3MU5-0000VM-Ei; Thu, 08 Dec 2022 14:23:05 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1p3MU2-0000Sp-Qo for guix-patches@gnu.org; Thu, 08 Dec 2022 14:23:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1p3MU2-0000Jm-IX for guix-patches@gnu.org; Thu, 08 Dec 2022 14:23:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1p3MU2-0002ga-EH; Thu, 08 Dec 2022 14:23:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#59908] [PATCH 3/4] gnu: Add r-pepsnmr. Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Thu, 08 Dec 2022 19:23:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 59908 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <59908@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 59908-submit@debbugs.gnu.org id=B59908.167052737610259 (code B ref 59908); Thu, 08 Dec 2022 19:23:02 +0000 Received: (at 59908) by debbugs.gnu.org; 8 Dec 2022 19:22:56 +0000 Received: from localhost ([127.0.0.1]:58620 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1p3MTw-0002fH-7C for submit@debbugs.gnu.org; Thu, 08 Dec 2022 14:22:56 -0500 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:52703) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1p3MTs-0002ee-UF for 59908@debbugs.gnu.org; Thu, 08 Dec 2022 14:22:53 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1670527366; x=1672341767; bh=guEvCPLDJfFARbMsEyxwxFMFNFT4HZ4hLC+yZJ4CNaQ=; b=GqwbKzHFxqRp 4S5p45EM8XTx0ekjYf6axI0FpcFuFyuP129XhFg0+5hQeEYgJySdnXexTi8zpUb9 n8/gipooN2mNLB2rf15rQlxq86ixWhTUhwCBOJNm6Fi4yA/GPtaETmifoJH6xEYR xeju1otfNcIA3l/pIe1D+zmf2Hhr1rU= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id D4EEEA05E4 for <59908@debbugs.gnu.org>; Thu, 8 Dec 2022 20:22:46 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.16; Thu, 8 Dec 2022 20:22:43 +0100 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Thu, 8 Dec 2022 20:22:31 +0100 Message-ID: <20221208192232.16413-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.38.1 In-Reply-To: <20221208192232.16413-1-madalinionel.patrascu@mdc-berlin.de> References: <20221208192232.16413-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27312.002 X-TM-AS-Result: No-10--4.523100-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePVU2WiOk7jaGim Izb1qb1PRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v9qc0EkR8fCHqY5ZGw7wyeHiTq hnFV2xYx3kbnzQEXFg/pFYtNoqkLEifsNgXDdrIaKYdYQLbymTU/6DJlZIj8JIpz++XQI8PGeAi CmPx4NwBnUJ0Ek6yhjxEHRux+uk8jfhP1xgyx3DOxFnE0hzKgbPaTfElBF6ygQPPRzOzFf7jZpg QTpHjLsvf8x9oLFDgvmALtr1glwhBe7zi59sEwE0gUTlQ7Ge1BIaTWpZZEl2txSR7be7fnTFTs4 ljtt094P2K/+wkyxVzs7KL+6XFB4pSBl0hpeDh8= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.523100-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27312.002 X-TM-SNTS-SMTP: EEDDB1D48601CC90F285BC574ADA21E5A18F31430F75AD10CB6AD07B3BD57B282002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Flow: FLOW_IN X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1670527439; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=X38UR17uHXwS/j+Ul6d6vTOHh/aoKmYUSSlatioYk6E=; b=n6yj7La0hN4vh4TwTdGVUiEI0iB6y+Poy4PvL7CE9v4tiBGleTLoySgVT79yu6sxENbX5H m+zwHHT6dBsR0oAmpUVN3h4HPTIO/YgVlDEGo4iMqGfSRPpOBV2NF0tKNDAg1d2xIuhK7Y VO+m48SF2sd0jCrZ5LLImCnRLUqWLhjn/zF4N9IkjqR0Nfs1ZJWH4EhrTdOpLFaGEt/hnF myr1a2uBr9nwBec1mwFQ0Mf1MWKPbdnrFIvXujVSjz996Mj1Ye0de6U4xpsvsmWQaiQlQZ j3ab/JlOOf5/nOnOg0Tqjp1tnAOeCVhroz32Sr7X8ZImnFwfEICNZ/uZ4cdasw== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1670527439; a=rsa-sha256; cv=none; b=jbWCa3XZYpZsn1sQo5Ey4LIKN2rK5JA/0M88Kmj5obxeSshw7WahpCG2oZoe1OGtb7X3k5 tYqmXIpHArLyfgSkZ1uadGTqoJLJi42ABnF/PbVldxL2MuuqFgLPNxzZYi8X3dmuzGy4V6 SCb4M6pfeNc0aCOV/ZbBz1C2qP96Fprg65bS0SYS+OGwxkU+JK/c7A/Q6u50ja8IYOsvij OGBg654gbNJ5wGS7deRDyQJVxvwnE+m9Ice/unKXUkZBiW2lVDcSTsGentUUM/iLouG2oJ Mp26kkKUzv1ANLIeJuUvji6c7iz1EpwzRRGa9Qt6zS6CeuTZuMGjkMKVWwUNPA== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=GqwbKzHF; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 8.64 X-Spam: Yes Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=GqwbKzHF; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 5A04FB5A7 X-Spam-Score: 8.64 X-Migadu-Spam: Yes X-Migadu-Scanner: scn1.migadu.com X-TUID: DBNbyu+Vrdi1 * gnu/packages/bioconductor.scm (r-pepsnmr): New variable. --- gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index c62c5970b8..740ec4b84b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8323,6 +8323,35 @@ (define-public r-perfmeas a given recall, F-score for single and multiple classes are available.") (license license:gpl2+))) +(define-public r-pepsnmr + (package + (name "r-pepsnmr") + (version "1.16.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "PepsNMR" version)) + (sha256 + (base32 + "02i29jinawssqlb33wvj0h9w6cfcvamlyfxdynd38jmwx23l15l5")))) + (properties `((upstream-name . "PepsNMR"))) + (build-system r-build-system) + (propagated-inputs + (list r-ggplot2 + r-gridextra + r-matrix + r-matrixstats + r-ptw + r-reshape2)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/ManonMartin/PepsNMR") + (synopsis "Pre-process 1H-NMR FID signals") + (description + "This package provides R functions for common pre-processing steps that are +applied on @acronym{1H-NMR, proton nuclear magnetic resonance} data. It also +provides a function to read the @acronym{FID, free induction decay} signals +directly in the Bruker format.") + (license license:gpl2))) + ;; This is a CRAN package, but it depends on a Bioconductor package. (define-public r-codedepends (package -- 2.38.1