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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=ZnMsx2i2; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.53 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=ZnMsx2i2; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 00F444D40 X-Spam-Score: 6.53 X-Migadu-Scanner: scn0.migadu.com X-TUID: q9OJ5o5+du/S * gnu/packages/cran.scm (r-gunifrac): New variable. --- gnu/packages/cran.scm | 44 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 44 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 415098aed3..646737ea31 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -667,6 +667,50 @@ (define-public r-guix-install repositories, replacing the need for installation via @code{devtools}.") (license license:gpl3+))) +(define-public r-gunifrac + (package + (name "r-gunifrac") + (version "1.7") + (source (origin + (method url-fetch) + (uri (cran-uri "GUniFrac" version)) + (sha256 + (base32 + "13qb5fw9km6p5x8li9x3liqbh833wf2v73npj8jl3msplzfk82vp")))) + (properties `((upstream-name . "GUniFrac"))) + (build-system r-build-system) + (propagated-inputs + (list r-ape + r-dirmult + r-foreach + r-ggplot2 + r-ggrepel + r-mass + r-matrix + r-matrixstats + r-modeest + r-rcpp + r-rmutil + r-statmod + r-vegan)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=GUniFrac") + (synopsis + "Generalized UniFrac distances and methods for microbiome data analysis") + (description + "This package provides a suite of methods for powerful and robust microbiome +data analysis, including data normalization, data simulation, community-level +association testing and differential abundance analysis. It implements generalized +UniFrac distances, Geometric Mean of Pairwise Ratios (GMPR) normalization, +semiparametric data simulator, distance-based statistical methods, and feature- +based statistical methods. The distance-based statistical methods include three +extensions of PERMANOVA: (1) PERMANOVA using the Freedman-Lane permutation scheme, +(2) PERMANOVA omnibus test using multiple matrices, and (3) analytical approach +to approximating PERMANOVA p-value. Feature-based statistical methods include +linear model-based methods for differential abundance analysis of zero-inflated +high-dimensional compositional data.") + (license license:gpl3))) + (define-public r-ids (package (name "r-ids") -- 2.38.1