From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <59835@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#59835] [PATCH 1/3] gnu: Add r-makecdfenv.
Date: Mon, 5 Dec 2022 16:21:51 +0100 [thread overview]
Message-ID: <20221205152153.18545-1-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <7734e3c0299847c9a5c367e2bcf77a6a@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-makecdfenv): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c62c5970b8..7cace3317c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6010,6 +6010,33 @@ (define-public r-made4
datasets (coinertia analysis).")
(license license:artistic2.0)))
+(define-public r-makecdfenv
+ (package
+ (name "r-makecdfenv")
+ (version "1.74.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "makecdfenv" version))
+ (sha256
+ (base32
+ "0bvj5dg6yfjnhga1z8788zmb98d8shyz8pzz0ggnml87c1p2gy25"))))
+ (properties `((upstream-name . "makecdfenv")))
+ (build-system r-build-system)
+ (inputs (list zlib))
+ (propagated-inputs
+ (list r-affy
+ r-affyio
+ r-biobase
+ r-zlibbioc))
+ (home-page "https://bioconductor.org/packages/makecdfenv")
+ (synopsis "Chip description file environment maker")
+ (description
+ "This package implements two functions. One of them reads an @code{Affymetrix}
+@acronym{CDF, chip description file} and creates a hash table environment containing
+the location/probe set membership mapping. The other one creates a package that
+automatically loads that environment.")
+ (license license:gpl2+)))
+
(define-public r-metaneighbor
(package
(name "r-metaneighbor")
base-commit: b2a848d23d37f31496e1ff664f1dcf6abcdcc388
--
2.38.1
next prev parent reply other threads:[~2022-12-05 15:24 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-12-05 15:18 [bug#59835] [PATCH] gnu: Add r-makecdfenv, r-altcdfenvs and r-harshlight MadalinIonel.Patrascu
2022-12-05 15:21 ` Mădălin Ionel Patrașcu [this message]
2022-12-05 15:21 ` [bug#59835] [PATCH 2/3] gnu: Add r-altcdfenvs Mădălin Ionel Patrașcu
2022-12-05 15:21 ` [bug#59835] [PATCH 3/3] gnu: Add r-harshlight Mădălin Ionel Patrașcu
2022-12-12 14:36 ` bug#59835: [PATCH 1/3] gnu: Add r-makecdfenv Ricardo Wurmus
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