From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <59142@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#59142] [PATCH 3/3] gnu: Add r-pando.
Date: Wed, 9 Nov 2022 04:13:31 +0100 [thread overview]
Message-ID: <20221109031331.12487-3-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20221109031331.12487-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioinformatics.scm (r-pando): New variable.
---
gnu/packages/bioinformatics.scm | 50 +++++++++++++++++++++++++++++++++
1 file changed, 50 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 47f5574eeb..87c93bab4d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7600,6 +7600,56 @@ (define-public r-chromunity
Pore-C concatemers.")
(license license:gpl3))))
+(define-public r-pando
+ (package
+ (name "r-pando")
+ (version "1.0.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/quadbiolab/Pando")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0c83anzdrbvg47p9xns2bxpjlx5z328can3jmzilw6rygwp7hyii"))))
+ (properties `((upstream-name . "Pando")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-bayestestr
+ r-brms
+ r-foreach
+ r-genomicranges
+ r-ggplot2
+ r-ggpointdensity
+ r-ggraph
+ r-glmnetutils
+ r-iranges
+ r-irlba
+ r-matrix
+ r-motifmatchr
+ r-pals
+ r-patchwork
+ r-seurat
+ r-signac
+ r-sparsematrixstats
+ r-tfbstools
+ r-tidygraph
+ r-tidyverse
+ r-uwot
+ r-xgboost))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/quadbiolab/Pando")
+ (synopsis
+ "Inferring regulomes from multi-modal single-cell genomics data")
+ (description
+ "@code{Pando} leverages multi-modal single-cell measurements to infer gene
+regulatory networks using a flexible linear model-based framework. By modeling
+the relationship between TF-binding site pairs with the expression of target
+genes, @code{Pando} simultaneously infers gene modules and sets of regulatory
+regions for each transcription factor.")
+ (license license:expat)))
+
(define-public r-presto
(let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
(revision "0"))
--
2.38.1
next prev parent reply other threads:[~2022-11-09 3:16 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-11-09 3:09 [bug#59142] [PATCH] gnu: Add r-pals, r-glmnetutils and r-pando MadalinIonel.Patrascu
2022-11-09 3:13 ` [bug#59142] [PATCH 1/3] gnu: Add r-pals Mădălin Ionel Patrașcu
2022-11-09 3:13 ` [bug#59142] [PATCH 2/3] gnu: Add r-glmnetutils Mădălin Ionel Patrașcu
2022-11-09 3:13 ` Mădălin Ionel Patrașcu [this message]
2022-11-09 9:06 ` bug#59142: [PATCH 1/3] gnu: Add r-pals Ricardo Wurmus
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