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[66.158.149.239]) by smtp.gmail.com with ESMTPSA id 2-20020ac82082000000b002f39b99f672sm4287690qtd.12.2022.05.14.21.47.39 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 14 May 2022 21:47:39 -0700 (PDT) From: Maxim Cournoyer Date: Sun, 15 May 2022 00:37:33 -0400 Message-Id: <20220515044629.6843-66-maxim.cournoyer@gmail.com> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220515044629.6843-1-maxim.cournoyer@gmail.com> References: <20220515044629.6843-1-maxim.cournoyer@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-To: larch@yhetil.org X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1652591303; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=18ueZGP4VEenTFn5hr9jXFNBZisN3rJVGY8jm5tk3Fk=; b=uyTkj3LxFWDbCmzgtXReg2EiwqBctCplc441ZrpKeWWwl4qJIv8gEE78+hazd7JEh+wtzG bfd1xn2bW420+JeUC0qaKG9CumWjUK8sKlL9Qd7qbWk0Nmgt3daX8J+H/fNK+x2RdsY64/ YcrIKn7HGWQjvy8TeIFbEWPpDrCSCWCR/WTGC39BR6uEoH5T2XFAqNWPZs1VJ8SFB+V+ZW JEBhG4IvaHQLgOnY43X9R55zEaOy6q/d23osoaOKNT5OX07ojijxaewcHMFHeh3Z9X19LS smIXekkgeN58CI5YDRRAleWAUXxSNd6tkDaYRe9tEUWObSfj7piZe8A72QffZA== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1652591303; a=rsa-sha256; cv=none; b=uRlVKk+ZwowU04NxH+mAkomWccDuAVgkSmwId4z69eHKeUEHFtZWV5hBnCHeCte+mU+iSq kgP4xuzybcVq0gekAeYm91uw4X7fwMM6j7M+zjdxZ4qhMnnBgbVhfgzsjtRKlauAJKGf5+ 0bPanGDLk3AXRgFXNf4E22I5zbv1Ze7w1H4S1RH8e/iIAcRb+B/ivktjYnaK1/AHTdLnwG kUqDeh9wAYHDtWVr3uQZyX6kNYo5tzijNL+LJDiS/ps0mRwO6usqcBXyxBFxZaP4ilcgmp AlCn+Z/9qVuxAr4ZCz3mn6AY1bLy9odEhhjSMOgCpCYSd133pejAKAqJdhYzKw== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=funTBZJB; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.47 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=funTBZJB; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 677493B949 X-Spam-Score: 6.47 X-Migadu-Scanner: scn1.migadu.com X-TUID: i77CLQ1wAJCo * gnu/packages/machine-learning.scm (python2-fastlmm): Delete variable. --- gnu/packages/machine-learning.scm | 32 ------------------------------- 1 file changed, 32 deletions(-) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 02cd6b31aa..7b377c7d35 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -1415,38 +1415,6 @@ (define-public vowpal-wabbit interactive learning.") (license license:bsd-3))) -(define-public python2-fastlmm - (package - (name "python2-fastlmm") - (version "0.2.21") - (source - (origin - (method url-fetch) - (uri (pypi-uri "fastlmm" version ".zip")) - (sha256 - (base32 - "1q8c34rpmwkfy3r4d5172pzdkpfryj561897z9r3x22gq7813x1m")))) - (build-system python-build-system) - (arguments - `(#:tests? #f ; some test files are missing - #:python ,python-2)) ; only Python 2.7 is supported - (propagated-inputs - (list python2-numpy - python2-scipy - python2-matplotlib - python2-pandas - python2-scikit-learn - python2-pysnptools)) - (native-inputs - (list unzip python2-cython python2-mock python2-nose)) - (home-page "http://research.microsoft.com/en-us/um/redmond/projects/mscompbio/fastlmm/") - (synopsis "Perform genome-wide association studies on large data sets") - (description - "FaST-LMM, which stands for Factored Spectrally Transformed Linear Mixed -Models, is a program for performing both single-SNP and SNP-set genome-wide -association studies (GWAS) on extremely large data sets.") - (license license:asl2.0))) - (define-public python-hyperopt (package (name "python-hyperopt") -- 2.36.0