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[66.158.149.239]) by smtp.gmail.com with ESMTPSA id 2-20020ac82082000000b002f39b99f672sm4287690qtd.12.2022.05.14.21.47.14 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 14 May 2022 21:47:14 -0700 (PDT) From: Maxim Cournoyer Date: Sun, 15 May 2022 00:36:57 -0400 Message-Id: <20220515044629.6843-30-maxim.cournoyer@gmail.com> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220515044629.6843-1-maxim.cournoyer@gmail.com> References: <20220515044629.6843-1-maxim.cournoyer@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-To: larch@yhetil.org X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1652591210; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=2FO4SlFDUJAdZ2iUJcF6XJprbUwOUti72BPrX1N+dgg=; b=lXjVV3VmkECg+076T0puKrMlXYL7UwqgZNleO4Hscc0xj1bZLEC7+sb39spCg2MoC2d19R xmYMy4gP7ZbKxSbAqHp0fJ5HxoYAqpXzdDvAXdX5wZI+vH0QAu/ApqPAc6JdOtV4RhoBCQ E5rI48pO25e6QavRLUViXKFs+5lL1rmO+fKbuUY/oIFdu5eiGUgN3qaR5eelBdTLS+Amth VM7b5mWCoXS0Npj9IV7NRa4qBTtIf7E+Dw9q0ZGwn8N2yFNqYsozSC3xxY3/4wT9yLBuDC /8qPg146o2+WVkSj3jDpQTvNUnfFA8cbGrc7kjkDpSZpq6clQlSdMQfAIo4NJA== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1652591210; a=rsa-sha256; cv=none; b=S9iA6NK9W7ZYpH4NrUCkQkGIsN8zQBbG8POAItACF07EfsN8yClBIYcsIGu8S4pj4BLB9z hC2IF1xDiATf/wEA8G2PRJM0U+h00JhVTvLbxzkjk/S8a6vfdajjGJrQTTnwe6Xwyr/qGb RvoXLmAON9NdbKXL92eiRtxALqA3LtNXd+/BnyemVFrAWllAYKCFebGvUTIlq1La4UDk/W qiM8bhwa1gapOizcLKAZtcPVophxTw8ST00Zvth67YkiGqpGOLe9nHcwkHi7vw+aulfcGN eB/hnqGv4bnVFzHvyXlSS++H9vf916uETlHPccagOp8oHNdXO0NFhvcqRkqRGQ== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=mvSBSFi9; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.17 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=mvSBSFi9; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 053883BA29 X-Spam-Score: 6.17 X-Migadu-Scanner: scn0.migadu.com X-TUID: ldcnX3XWB6zp * gnu/packages/bioinformatics.scm (python2-pbcore): Delete variable. --- gnu/packages/bioinformatics.scm | 33 --------------------------------- 1 file changed, 33 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index dd811815e0..bda958f6f5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5284,39 +5284,6 @@ (define-public orfm (home-page "https://github.com/wwood/OrfM") (license license:lgpl3+))) -(define-public python2-pbcore - (package - (name "python2-pbcore") - (version "1.2.10") - (source (origin - (method url-fetch) - (uri (pypi-uri "pbcore" version)) - (sha256 - (base32 - "1kjmv891d6qbpp4shhhvkl02ff4q5xlpnls2513sm2cjcrs52f1i")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2 ;pbcore < 2.0 requires Python 2.7 - #:phases (modify-phases %standard-phases - (add-after 'unpack 'remove-sphinx-dependency - (lambda _ - ;; Sphinx is only required for documentation tests, which - ;; we do not run; furthermore it depends on python2-sphinx - ;; which is no longer maintained. - (substitute* "requirements-dev.txt" - (("^sphinx") "")) - #t))))) - (propagated-inputs - (list python2-cython python2-numpy python2-pysam python2-h5py)) - (native-inputs - (list python2-nose python2-pyxb)) - (home-page "https://pacificbiosciences.github.io/pbcore/") - (synopsis "Library for reading and writing PacBio data files") - (description - "The pbcore package provides Python APIs for interacting with PacBio data -files and writing bioinformatics applications.") - (license license:bsd-3))) - (define-public prank (package (name "prank") -- 2.36.0