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[66.158.149.239]) by smtp.gmail.com with ESMTPSA id 2-20020ac82082000000b002f39b99f672sm4287690qtd.12.2022.05.14.21.47.10 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 14 May 2022 21:47:10 -0700 (PDT) From: Maxim Cournoyer Date: Sun, 15 May 2022 00:36:52 -0400 Message-Id: <20220515044629.6843-25-maxim.cournoyer@gmail.com> X-Mailer: git-send-email 2.36.0 In-Reply-To: <20220515044629.6843-1-maxim.cournoyer@gmail.com> References: <20220515044629.6843-1-maxim.cournoyer@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-To: larch@yhetil.org X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1652590546; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=WVJNxoa/ryDyNEBJtd5+aEeGx2iO0XwnvQ1eh71S4lE=; b=V/6xdAdI8ladtFYAMJVZw+Tf6fY0h46mYZgTCT96+8Ey7CVWNXtBs8KDXbloHB7AA3pHCP HK/fikUtOnKhs2tJ/iyUyzIIwYU2gkc/EQz47dq0hMgh6HWzAC+TwYhWsMNc+dHnt5aFI/ CnwmUWz1UU3NXG1ecpZOswIARxZPQp35fmttNT3EtW/Jo1nQyuWjLLyK8rbJvZwqSkOGT0 w/mDhxChvT7ZIuZOqWrmzYn5gnMOC7ySEfMkxBz37wsLbkn2MZE6wTMxsWk65Nng/FwUSB jlhpJLnsTwvW84xvQNUFGhZg8wCVpcL+8VU6eRPMOp+OWlENnTqxQrLKOnPopg== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1652590546; a=rsa-sha256; cv=none; b=dzi9TxUPyHo5kbPpXc53PUWpKj4w2zgTtelTmnDlXsI3m6cNemc+k9ZkqWzjzYyCckyAvE 1D3xBRJM9BVgUh3FziHhvIHisecyZ1DPTrXrTzPduz067mdaNdcs0jSw2xVV/5UTibqZc2 JzBGgqAzYcF38yiTxmg+xLojAI7jj51ss1p1Eb5KRiRFooFxkfmsRl5aFiEJXEAQqxqJLk 5QD76pEbmDt0d8SyNW61F+AS1pZvlPY1hThDWe3Pm41KwY/8MIk+2Ll+HoIc29efMVCdl2 g+3GUX+EeWwM1AOKSxAACP6A8pyJbX2UEBEu+pE8PIMKK3CKWfSOa28TXcMoOA== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=o5MkHdqn; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.47 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=o5MkHdqn; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 2D99B3B81C X-Spam-Score: 6.47 X-Migadu-Scanner: scn1.migadu.com X-TUID: CTD5+wJT6YHi * gnu/packages/bioinformatics.scm (poretools): Delete variable. --- gnu/packages/bioinformatics.scm | 36 --------------------------------- 1 file changed, 36 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cb3328cc1c..c70b9e3aa7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12855,42 +12855,6 @@ (define-public porechop Barcoding Kit or Rapid Barcoding Kit.") (license license:gpl3+)))) -(define-public poretools - ;; The latest release was in 2016 and the latest commit is from 2017 - ;; the recommended way to install is to clone the git repository - ;; https://poretools.readthedocs.io/en/latest/content/installation.html - (let ((commit "e426b1f09e86ac259a00c261c79df91510777407") - (revision "1")) - (package - (name "poretools") - (version (git-version "0.6.0" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/arq5x/poretools") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0bglj833wxpp3cq430p1d3xp085ls221js2y90w7ir2x5ay8l7am")))) - (build-system python-build-system) - ;; requires python >=2.7, <3.0, and the same for python dependencies - (arguments `(#:python ,python-2)) - (inputs - (list hdf5)) - (propagated-inputs - (list python2-dateutil python2-h5py python2-matplotlib - python2-pandas python2-seaborn)) - (home-page "https://poretools.readthedocs.io") - (synopsis "Toolkit for working with nanopore sequencing data") - (description - "The MinION from Oxford Nanopore Technologies is a nanopore sequencer. -This @code{poretools} package is a flexible toolkit for exploring datasets -generated by nanopore sequencing devices for the purposes of quality control and -downstream analysis. Poretools operates directly on the native FAST5, a variant -of the Hierarchical Data Format (HDF5) standard.") - (license license:expat)))) - (define-public jamm (package (name "jamm") -- 2.36.0