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spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.89 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=kqPSymQV; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: C26AA9EF1 X-Spam-Score: 6.89 X-Migadu-Scanner: scn1.migadu.com X-TUID: B32hc0G00Zcv * gnu/packages/bioconductor.scm (r-agdex): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 67ee6079c6..1de7f83845 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1664,6 +1664,33 @@ (define-public r-adamgui the @code{GFAGpathUi} function.") (license license:gpl2+))) +(define-public r-agdex + (package + (name "r-agdex") + (version "1.42.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AGDEX" version)) + (sha256 + (base32 + "0y0q4zdybr5hlsi7qy2hf6c2sqr2z2211wz36dz70jkqyr0ggw64")))) + (properties `((upstream-name . "AGDEX"))) + (build-system r-build-system) + (propagated-inputs (list r-biobase r-gseabase)) + (home-page "https://bioconductor.org/packages/AGDEX") + (synopsis + "Evaluate agreement of differential expression for cross-species genomics") + (description + "The objective of @code{AGDEX} is to evaluate whether the results of a pair +of two-group differential expression analysis comparisons show a level of +agreement that is greater than expected if the group labels for each two-group +comparison are randomly assigned. The agreement is evaluated for the entire +transcriptome and (optionally) for a collection of pre-defined gene-sets. +Additionally, the procedure performs permutation-based differential expression +and meta analysis at both gene and gene-set levels of the data from each +experiment.") + (license license:gpl2+))) + (define-public r-aneufinder (package (name "r-aneufinder") base-commit: 4fb6ef6636acd7608889639c1b2e492517256f76 -- 2.34.0