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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=XsE5uxqN; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 7.09 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=XsE5uxqN; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 1A6053DF33 X-Spam-Score: 7.09 X-Migadu-Scanner: scn0.migadu.com X-TUID: nFkh03C3WrbE * gnu/packages/cran.scm (r-saver): New variable. --- gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 21cfca3102..ab93a94158 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2333,6 +2333,37 @@ (define-public r-sass language, which is stable, powerful, and CSS compatible.") (license license:expat))) +(define-public r-saver + (package + (name "r-saver") + (version "1.1.2") + (source (origin + (method url-fetch) + (uri (cran-uri "SAVER" version)) + (sha256 + (base32 + "1s1kw8idkaj7j90fw4qn9k0wd4vz0sblsk06ry6lm4afcar0p158")))) + (properties `((upstream-name . "SAVER"))) + (build-system r-build-system) + (propagated-inputs (list r-doparallel r-foreach r-glmnet r-iterators + r-matrix)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/mohuangx/SAVER") + (synopsis + "Recovery of the gene expression profile in noisy and sparse scRNA-seq data") + (description + "This package is an implementation of a regularized regression prediction +and empirical Bayes method to recover the true gene expression profile in noisy +and sparse single-cell RNA-seq data. In @dfn{single-cell RNA sequencing} +(scRNA-seq) studies, only a small fraction of the transcripts present in each +cell are sequenced. This leads to unreliable quantification of genes with low +or moderate expression, which hinders downstream analysis. This package +@dfn{single-cell analysis via expression recovery} (SAVER) implements an +expression recovery method for unique molecule index (UMI)-based scRNA-seq data +that borrows information across genes and cells to provide accurate expression +estimates for all genes.") + (license license:gpl2))) + ;; This package includes minified JavaScript files. When upgrading please ;; check that there are no new minified JavaScript files. (define-public r-bslib base-commit: 30ff557bd7255dddec16f4a032e58f5a88d5e448 -- 2.34.0