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spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.09 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b="O7j9/z9p"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 29FEA3BA51 X-Spam-Score: 6.09 X-Migadu-Scanner: scn0.migadu.com X-TUID: t7vBkff+G8eM * gnu/packages/bioconductor.scm (r-adamgui): New variable. --- gnu/packages/bioconductor.scm | 47 +++++++++++++++++++++++++++++++++++ 1 file changed, 47 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fa862d736f..484fb2e0a6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1616,6 +1616,53 @@ (define-public r-adam functionally associated genes} (GFAG).") (license license:gpl2+))) +(define-public r-adamgui + (package + (name "r-adamgui") + (version "1.10.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ADAMgui" version)) + (sha256 + (base32 + "0n06bb9djigha0249lxx84pn9q0xiryxbv25qsc3p2h46iaxi3wq")))) + (properties `((upstream-name . "ADAMgui"))) + (build-system r-build-system) + (propagated-inputs (list r-adam + r-colorramps + r-data-table + r-dplyr + r-dt + r-ggplot2 + r-ggpubr + r-ggrepel + r-ggsignif + r-go-db + r-gridextra + r-knitr + r-rcolorbrewer + r-reshape2 + r-shiny + r-shinyjs + r-stringi + r-stringr + r-testthat + r-varhandle)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/ADAMgui/") + (synopsis + "Graphical user interface for gene activity and diversity analysis module") + (description + "This package @code{ADAMgui} is a @dfn{graphical user interface} (GUI) for +the @code{ADAM} package. The @code{ADAMgui} package provides 2 shiny-based +applications that allows the user to study the output of the @code{ADAM} +package files through different plots. It's possible, for example, to choose a +specific @dfn{group of functionally associated genes} (GFAG) and observe the +gene expression behavior with the plots created with the @code{GFAGtargetUi} +function. Features such as differential expression and fold change can be +easily seen with aid of the plots made with @code{GFAGpathUi} function.") + (license license:gpl2+))) + (define-public r-aneufinder (package (name "r-aneufinder") base-commit: 30ff557bd7255dddec16f4a032e58f5a88d5e448 -- 2.34.0