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spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.84 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=eLNxP89B; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 2121714AB0 X-Spam-Score: 6.84 X-Migadu-Scanner: scn1.migadu.com X-TUID: wu7veoJfpNly * gnu/packages/bioconductor.scm (r-absseq): New variable. --- gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 803437a033..25e02bebad 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1139,6 +1139,35 @@ (define-public r-abadata All datasets are restricted to protein coding genes.") (license license:gpl2+))) +(define-public r-absseq + (package + (name "r-absseq") + (version "1.48.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ABSSeq" version)) + (sha256 + (base32 + "0l2hh6qv4lhw1g1kciw2f3ssj3lw83hqxnkmxzmv7snik3k6i650")))) + (properties `((upstream-name . "ABSSeq"))) + (build-system r-build-system) + (propagated-inputs (list r-limma r-locfit)) + (home-page "https://bioconductor.org/packages/ABSSeq") + (synopsis + "RNA-Seq analysis based on modelling absolute expression differences") + (description + "This package @code{ABSSeq} implements a new RNA-Seq analysis method and +integrates two modules: a basic model for pairwise comparison and a linear +model for complex design. RNA-Seq quantifies gene expression with reads count, +which usually consists of conditions (or treatments) and several replicates for +each condition. This software infers differential expression directly by the +counts difference between conditions. It assumes that the sum counts +difference between conditions follow a negative binomial distribution. In +addition, @code{ABSSeq} moderates the fold-changes by two steps: the expression +level and gene-specific dispersion, that might facilitate the gene ranking by +fold-change and visualization.") + (license license:gpl3+))) + (define-public r-aneufinderdata (package (name "r-aneufinderdata") -- 2.34.0