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spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 5.43 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=cJNoxJkZ; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 48BCD28B4E X-Spam-Score: 5.43 X-Migadu-Scanner: scn0.migadu.com X-TUID: QFzfOBHcuIvI * gnu/packages/bioconductor.scm (r-wppi): New variable. --- gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ce1e23f0bf..9d6c7cd5a3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9315,6 +9315,45 @@ (define-public r-xcms data for high-throughput, untargeted analyte profiling.") (license license:gpl2+))) +(define-public r-wppi + (package + (name "r-wppi") + (version "1.2.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "wppi" version)) + (sha256 + (base32 + "1spwa8p6w3pyw21dvd1lrhcz1sphdsmsd408jv55ss9nbgvgrp23")))) + (properties `((upstream-name . "wppi"))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) + (propagated-inputs (list r-dplyr + r-igraph + r-logger + r-magrittr + r-matrix + r-omnipathr + r-progress + r-purrr + r-rcurl + r-rlang + r-tibble + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/AnaGalhoz37/wppi") + (synopsis "Weighting protein-protein interactions") + (description + "This package predicts functional relevance of protein-protein +interactions based on functional annotations such as Human Protein Ontology and +Gene Ontology, and prioritizes genes based on network topology, functional +scores and a path search algorithm.") + (license license:expat))) + (define-public r-wrench (package (name "r-wrench") -- 2.34.0