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spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.78 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=J1DpdR7o; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 8CA4036055 X-Spam-Score: 6.78 X-Migadu-Scanner: scn1.migadu.com X-TUID: VigEGJVpzF5p * gnu/packages/bioconductor.scm (r-cycombine): New variable. --- gnu/packages/bioconductor.scm | 43 +++++++++++++++++++++++++++++++++++ 1 file changed, 43 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 55d397e5cf..ffa38fda3a 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10066,6 +10066,49 @@ (define-public r-consensusclusterplus cluster count and membership by stability evidence in unsupervised analysis.") (license license:gpl2))) +;; This is the latest commit and it solves a bug from the latest release. +(define-public r-cycombine + (let ((commit "f18504bc83ff5daee2b5eb4b28f09abdaaa66698") (revision "1")) + (package + (name "r-cycombine") + (version (git-version "0.2.6" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/biosurf/cyCombine") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1fiwnik8iahg01732fik85xhz359x32f1xc59h443pdf7jancskm")))) + (properties `((upstream-name . "cyCombine"))) + (build-system r-build-system) + (propagated-inputs + (list r-biobase + r-cytolib + r-dplyr + r-flowcore + r-ggplot2 + r-knitr + r-kohonen + r-magrittr + r-purrr + r-rcolorbrewer + r-readr + r-readxl + r-stringr + r-sva + r-tibble + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/biosurf/cyCombine") + (synopsis "Integration of single-cell cytometry datasets") + (description + "This package provides a method for combining single-cell cytometry +datasets, which increases the analytical flexibility and the statistical power +of the analyses while minimizing technical noise.") + (license license:expat)))) + (define-public r-cytolib (package (name "r-cytolib") -- 2.34.0