From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:2:c151::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id /JzgDAPHU2BQbgAA0tVLHw (envelope-from ) for ; Thu, 18 Mar 2021 21:32:51 +0000 Received: from aspmx2.migadu.com ([2001:41d0:2:c151::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id EKcOCAPHU2AJVAAAB5/wlQ (envelope-from ) for ; Thu, 18 Mar 2021 21:32:51 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx2.migadu.com (Postfix) with ESMTPS id 3885212389 for ; Thu, 18 Mar 2021 22:32:50 +0100 (CET) Received: from localhost ([::1]:48890 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lN0G9-0001XX-By for larch@yhetil.org; Thu, 18 Mar 2021 17:32:49 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:37040) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lN0Fs-0001W1-7U for guix-devel@gnu.org; Thu, 18 Mar 2021 17:32:32 -0400 Received: from dd26836.kasserver.com ([85.13.145.193]:59468) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lN0Fo-0006eh-5o for guix-devel@gnu.org; Thu, 18 Mar 2021 17:32:31 -0400 Received: from localhost (80-110-127-104.cgn.dynamic.surfer.at [80.110.127.104]) by dd26836.kasserver.com (Postfix) with ESMTPSA id EFB713361B60; Thu, 18 Mar 2021 22:32:19 +0100 (CET) Date: Thu, 18 Mar 2021 22:32:15 +0100 From: Danny Milosavljevic Subject: Re: GNOME 3.34 in GNU Guix and security Message-ID: <20210318223215.382fda54@scratchpost.org> In-Reply-To: <15fc2434-2a8e-2a42-1c2a-9ea0885c1c9c@raghavgururajan.name> References: <4720e347b48bd6ca4710b461cadecf0b65aa6442.camel@zaclys.net> <87im5yqfhl.fsf@elephly.net> <15fc2434-2a8e-2a42-1c2a-9ea0885c1c9c@raghavgururajan.name> X-Mailer: Claws Mail 3.17.8 (GTK+ 2.24.32; x86_64-pc-linux-gnu) MIME-Version: 1.0 Content-Type: multipart/signed; boundary="Sig_/=hHv/mU4NNVtn6OkKhze_Aw"; protocol="application/pgp-signature"; micalg=pgp-sha512 Received-SPF: none client-ip=85.13.145.193; envelope-from=dannym@scratchpost.org; helo=dd26836.kasserver.com X-Spam_score_int: 5 X-Spam_score: 0.5 X-Spam_bar: / X-Spam_report: (0.5 / 5.0 requ) BAYES_00=-1.9, LONGWORDS=2.035, MISSING_HEADERS=1.021, RCVD_IN_DNSWL_LOW=-0.7, SPF_HELO_NONE=0.001, SPF_NONE=0.001 autolearn=no autolearn_force=no X-Spam_action: no action X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: Raghav Gururajan , guix-devel@gnu.org Errors-To: guix-devel-bounces+larch=yhetil.org@gnu.org Sender: "Guix-devel" X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1616103170; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:cc:cc:mime-version:mime-version: content-type:content-type:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post; bh=n10ytv2YnnHdjBVOXZsKwP5pT7/ThTxASFK6QbPVwiU=; b=knmAoHEkeJUN8pBTpBcLPplBdYNT6Hr1lYt6mPuzZzTWeIGFNLAwlkjQvggQNNaLHV4Nfk Rp95qDUbKrz4gdEE0CmjVE5wKbhx0ls3h2mRYkPg1+K2xgQEYumFrpUClv3KueYmw1Xz63 4Acrcx+/XGeoUH4AWGjK+2GHfbbWsCSNKJKFHbqLAA8wDGmlZA/QeRxirdch/RBrGyojIz ypDsqZf9hafwjVrxkk2TbbO0fhJpcwVRxkrZHEWhLY96/EHrKjy0fu22XLDX5R50qNNLYX sUF7XMqhAjobjBBzJVtBmyytucw8ni81XlBPxiLdQOPhAcE3EFZA4vRwEs822g== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1616103170; a=rsa-sha256; cv=none; b=G8nK0vR654ZH7+uAdpzzzz7fc3HAl2NrocFb0nwNVGsLITf8DuDR/WtDsrGsNq798xlNVQ SnhoiLpuPaWXev2nwS6AVQi9JOtUnAUd9frxfRxeBxSJRK7WweVhgUzWqWlwN8XsVRu1ew nbRftbA5RPih0s4ex98k5gTQqzx+HpeLM0NKIDlETVEMuTFhIfZ+gGpBD9IdHmfON9P1sS J/GwyMNvZUyZv7BHvS78pJ7nQJo7cZvR/0JxCPUId+zJjehuDKFqA60wu8HIzifIXmG1hl ltIywWvFTA7v65yRoXTSTKrLopY97jTF6GpPil2TsuVx7SWCflonjuzC1AhEdQ== ARC-Authentication-Results: i=1; aspmx2.migadu.com; dkim=none; dmarc=none; spf=pass (aspmx2.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Migadu-Spam-Score: -2.51 Authentication-Results: aspmx2.migadu.com; dkim=none; dmarc=none; spf=pass (aspmx2.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Migadu-Queue-Id: 3885212389 X-Spam-Score: -2.51 X-Migadu-Scanner: scn0.migadu.com X-TUID: ucyvVheEjKMb --Sig_/=hHv/mU4NNVtn6OkKhze_Aw Content-Type: text/plain; charset=US-ASCII Content-Transfer-Encoding: quoted-printable Hello, core-updates is still in a pretty bad state. I'd be glad to merge Raghav's patches (which he already reworked to be curr= ent for core-updates!) to core-updates--but right now, Guix packages don't = build BEFORE or after applying these patches to core-updates. Please, let's do something about that. A short summary of what is at least broken: [(1) FTP with IPv6--or with the new patch, some other FTP that don't suppor= t EPSV (the latter is a server problem, but the former had been bug in Guix= ). So I guess that one is fixed.] (2) Source files have been in-place replaced upstream with a lot of package= s (see my bug report about the topic). fldigi has such a problem but can j= ust be updated. This is easy to see by just building without substitutes--= and it doesn't do anyone any good for me to file individual bug reports for= each and every one of those (3) libusb-for-axoloti build failure (guix build axoloti-patcher-next) (4) bug applying patches in sources unpacked from zip files (I just posted = patch 47203 to guix-patches) (5) download failed "https://bioconductor.org/packages/release/bioc/src/con= trib/DelayedArray_0.16.1.tar.gz" 404 "Not Found" = = =20 That doesn't mean that those are the only problems. It means I got frustra= ted and stopped trying, lest I find more problems (which would be easy). My current rebuild command for build-testing the first of Raghav's patches = is (from guix refresh -l with some editing--because it didn't work without = editing. Sigh): ./pre-inst-env guix build -K --no-substitutes foo2zjs docker localed jnetto= p raul libinstpatch hdup rdup connman rust-gobject-sys rust-gio rust-glib r= ust-gio-sys rust-gobject-sys rust-gio-sys rust-glib-sys rust-glib rust-glib= -sys rust-gio rust-glib rust-gio 4store mdbtools ncdc american-fuzzy-lop sd= cv duperemove libticalcs2 ecl-enchant imposm3 spatialite-tools poly2tri-c g= nome-shell-extension-hide-app-icon gnome-shell-extension-topicons-redux tir= amisu gnome-shell-extension-paperwm gnome-shell-extension-clipboard-indicat= or gnome-shell-extension-dash-to-dock gnome-shell-extension-dash-to-panel l= inkchecker fortune-mod rust-gdk-pixbuf-sys rust-gdk-pixbuf rust-gdk-pixbuf = rust-gdk-pixbuf-sys rust-gdk-pixbuf rust-atk rust-atk-sys ddcutil irssi rsp= amd emacs-mu4e-jump-to-list emacs-mu4e-conversation emacs-helm-mu emacs-mu4= e-patch mc bitlbee-discord fna mojoshader-cs glyr remid-lv2 nbd ocaml-lwt-l= og brlaser igt-gpu-tools pscircle ztoolkit rust-cairo-sys-rs rust-cairo-rs = rust-cairo-rs rust-cairo-sys-rs rust-cairo-rs libratbag kaldi-gstreamer-ser= ver playerctl python2-pyatspi guile-charting xplanet rust-pango rust-pango-= sys rust-pango rust-pango rust-pango-sys font-culmus font-fantasque-sans fo= nt-meera-inimai font-linuxlibertine fntsample plymouth python-pygraphviz py= thon2-pygraphviz pynac makefile2graph sigrok-cli ibutils rust-andrew rust-s= mithay-clipboard mesa-opencl-icd picom rakarrack flamp flrig flwrap tigervn= c-client dillo tuxpaint-config infamous-plugins sorcer non-sequencer non-ti= meline non-mixer alex4 virtualgl celestia tao slim chipmunk aseprite python= 2-mapnik perceptualdiff megacmd feh sxiv screenfetch ranger eureka git-open= privoxy fluxbox xmenu idesk xnotify hsetroot python-django-sortedm2m pytho= n-django-simple-math-captcha python-django-override-storage python-django-c= ontrib-comments python-easy-thumbnails python-django-assets python-django-a= uth-ldap python-django-url-filter python-django-netfields python-django-con= tact-form python-django-logging-json python-django-rq python-django-debug-t= oolbar-alchemy patchwork python-django-statici18n font-cozette freedoom mco= mix conda visidata gajim-omemo python2-ledgerblue nototools python2-anacond= a-client python2-reportlab python2-qrcode libfreenect-examples perl-opengl = setbfree xfe gmsh extempore sherlock-lv2 zynaddsubfx dragonfly-reverb ninja= s2 helm zam-plugins wolf-shaper patchmatrix wolf-spectrum maim xdriinfo glm= ark2 insight-toolkit insight-toolkit egl-wayland beignet intel-vaapi-driver= libvdpau-va-gl mediasdk libva-utils vulkan-tools swayidle kanshi wlr-randr= wl-clipboard wev foot wterm pass-otp pass-git-helper python2-xdo clipmenu = libstdc++-doc libstdc++-doc python2-pydot darcs pdf2djvu osm2pgsql postgis = netcdf-fortran python-netcdf4 nmoldyn domainfinder mes mes-rb5 python-anytr= ee python2-dulwich python2-graphql-core python-ws4py python-locust python-p= ykka python-gipc python-pykafka uriparser libxmlplusplus pangomm emacs-w3m = emacs-blimp emacs-gif-screencast emacs-image+ tango-icon-theme catimg chafa= perl-catalyst-plugin-captcha ecl-ltk emacs-theme-magic skribilo solaar wla= -dx keepalived python-symengine alacritty python-pylibmc python2-pylibmc rm= lint libabigail python-cffi-documentation emacs-helm-notmuch notmuch-addrlo= okup-c patches neomutt muchsync afew mpd-mpc ncmpc python-cantools bpython = python-robotframework-sshlibrary python-robotframework-lint python-falcon-c= ors python-git-review python-os-client-config websockify pwclient presentty= python-mastodon-py python-databricks-cli twitchy poetry cwltool ledger-age= nt keepkey-agent sshoot python-translate-toolkit xandikos hangups python-ma= ilman-hyperkitty poezio python-celery alot magic-wormhole docker-compose si= lkaj python-flask-restplus python-pytest-check-links python-flasgger python= -swagger-spec-validator emacs-python-black rtv tuir python-django-taggit em= acs-py-isort postorius vdirsyncer python-libcst python-dictdiffer python-or= ator python-flask-restx python-minio python-hyperkitty python-transient pyt= hon-behave-web-api jrnl python-pytest-virtualenv python-swiftclient knot-re= solver python-sphinx-intl python-sphinx-cloud-sptheme python-guzzle-sphinx-= theme mdpo khal python-nbsphinx casync certbot python-daemux varnish-module= s csvkit dex python2-faker python2-service-identity python2-swagger-spec-va= lidator python2-pika python2-carbon python2-celery python2-sphinx-repoze-au= tointerface python2-guzzle-sphinx-theme python2-sphinx-cloud-sptheme python= 2-sphinxcontrib-programoutput paps kmscon ecl-mcclim tectonic guile2.2-char= ting ghc-chart-cairo grim slurp libgdiplus gromacs pocl slurm slurm slurm o= penmpi-thread-multiple spindle fftw-openmpi intel-mpi-benchmarks codingquar= ry raxml pardre bless elpa-openmpi superlu-dist dune-alugrid-openmpi slepc-= complex-openmpi netcdf-parallel-openmpi dune-subgrid-openmpi elemental dune= -pdelab-openmpi python-pyopencl mpich slurm-drmaa hwloc vl1-emulator bchopp= r x42-plugins regrader yoshimi bjumblr bshapr surge-synth fogpad bschaffl d= pf-plugins avldrums-lv2 geonkick spectacle-analyzer shiru-lv2 lsp-plugins b= sequencer artyfx i3lock-color python2-i3-py quickswitch-i3 swaylock mako i3= lock i3-gaps bemenu pdf2svg pdfgrep python-pdftotext xapers yubico-piv-tool= texlive texlive-l3build texlive-luaotfload texlive-latex-supertabular texl= ive-latex-blindtext texlive-mflogo texlive-latex-gcite dot2tex texlive-late= x-dinbrief texlive-wasysym texlive-fontspec texlive-latex-acronym texlive-l= atex-galois texlive-latex-draftwatermark texlive-latex-acmart texlive-beame= r texlive-marginnote texlive-latex-g-brief texlive-generic-babel-german tex= live-todonotes texlive-latex-polyglossia texlive-latex-xmpincl texlive-pdfx= texlive-pstool texlive-latex-amsrefs texlive-latex-changepage velvet fastc= ap guile-cv chez-scmutils chez-fmt chez-irregex chez-sockets loko-scheme hy= pre emacs-mit-scheme-doc dealii-openmpi cl-slynk cl-mk-string-metrics cl-s-= xml-rpc cl-ltk cl-repl-utilities cl-exponential-backoff cl-geco cl-log cl-p= ortable-threads cl-trivial-timeout cl-clesh cl-clawk cl-printv cl-napa-fft3= cl-cluffer cl-contextl cl-strings cl-unix-opts cl-bordeaux-fft cl-hu.dwim.= defclass-star cl-make-hash cl-glyphs cl-maidenhead cl-olc cl-mgrs cl-abnf c= l-ixf cl-trivial-benchmark cl-sycamore cl-inflector cl-hu.dwim.common cl-1a= m cl-envy cl-db3 emacs-sly-stepper cl-qbase64 cl-ascii-table cl-3b-bmfont c= l-clamp cl-xmls cl-graph cl-mustache cl-moptilities cl-project cl-coroutine= cl-str cl-lquery cl-z85 cl-css cl-livesupport cl-simple-parallel-tasks cl-= queues cl-enchant cl-hdf5-cffi cl-magicffi cl-zstd cl-claw-utils cl-autowra= p cl-archive cl-deeds cl-supertrace cl-progress-bar cl-find-port cl-prevale= nce cl-trivial-clipboard cl-markup cl-bst cl-fset cl-origin cl-numcl cl-slu= g cl-mssql cl-py-configparser cl-nodgui cl-green-threads cl-qrencode cl-bas= e32 ecl-caveman cl-string-match cl-markdown cl-ledger snap cl-uglify-js cl-= varjo cl-generic-cl sbcl-clsql cl-clsql cl-quicksearch cl-zs3 cl-prometheus= cl-trivial-download cl-ana cl-hooks cl-py4cl cl-burgled-batteries3 cl-data= fly cl-mito cl-caveman cl-calispel cl-cmd cl-rdkafka cl-lzlib cl-simple-neu= ral-network cl-clml cl-random-forest cl-dbus cl-common-lisp-jupyter cl-mccl= im cl-clx-xembed cl-clx-truetype cl-stumpwm cl-ppath cl-gtwiwtg cl-qmynd pg= loader sbcl-stumpwm-net sbcl-stumpwm-kbd-layouts sbcl-stumpwm-globalwindows= sbcl-stumpwm-mem stumpwm-with-slynk sbcl-stumpwm-ttf-fonts sbcl-stumpwm-wi= fi sbcl-stumpwm-swm-gaps sbcl-stumpwm-pass sbcl-stumpwm-winner-mode sbcl-st= umpwm-screenshot sbcl-stumpwm-cpu sbcl-stumpwm-stumptray sbcl-stumpwm-numpa= d-layouts python-pypandoc gp2c eclib cm cmh python-fpylll python-cypari2 py= thon2-cypari2 discrover r-sigpathway r-iclusterplus r-deds r-gagedata r-wid= gettools r-arrmnormalization r-bhc r-dirichletmultinomial rsem r-annotation= tools r-affycomp r-bioccasestudies r-centipede r-affycontam r-ouch r-tinyte= st r-catdap r-udunits2 r-rismed r-svmisc r-rmpi r-abc-rap r-abf2 r-wesander= son r-acd r-nbclust r-entropy r-hwde r-zeallot r-tdthap r-laplacesdemon r-h= ttpcode r-rcdd r-adgoftest r-acclma r-fmsb r-algdesign r-zseq r-rmpfr r-ctc= r-bootstrap r-acnr r-aca r-adagio r-actuar r-adapsamp r-idr r-rots r-ecp r= -xyz r-rcpproll r-abcoptim r-scrypt r-protviz r-fst r-bqtl r-dtw r-untb r-b= oa r-acceptances ampling r-xmisc r-brglm r-rda r-aspi r-clisymbols r-parmigene r-mcmc r-aggr= egation r-highlight r-als r-abcrlda r-stabledist r-infotheo r-rsofia r-txtp= lot r-overlap r-tractor-base r-acopula r-vbsr r-accrued r-pdist r-npsurv r-= ksamples r-abps r-blockfest r-survivalroc r-stepwise r-abundant r-rmeta r-a= be r-aws r-bindrcpp r-r2html r-hapassoc r-mapproj r-dyn r-dcv r-acss r-stru= cchange r-performanceanalytics r-acp r-geosphere r-acepack r-noiseq r-tea r= -softimpute r-arules r-acrt r-boruta r-triform r-perfmeas r-abcadm r-nabor = r-drimpute r-dimred r-forge r-tgstat r-activpalprocessing r-trimcluster r-b= iased-urn r-zyp r-pastecs r-energy r-acrm r-biodist r-bgmix r-tgconfig r-ab= canalysis r-orddom r-diversitree r-birewire r-ggm r-phangorn r-diffusionmap= r-bdgraph r-influencer r-rbiofabric r-colorout r-birta r-adaptivesparsity = r-abnormality r-zim r-grouped r-flare r-abcp2 r-acfmperiod r-acousticndlcod= er r-acm4r r-bisquerna r-activedriver r-acswr r-acet r-sampling r-huge r-pp= cor r-ddalpha r-codedepends r-grimport2 r-sparql r-acmer r-mvabund r-rareme= tals2 r-activity r-snp-plotter r-clusteval r-snpmaxsel r-asd r-tam r-catter= plots r-d3network r-semtools r-lassopv r-lpme r-biggr r-ace2fastq r-bibtex = r-snakecase r-latex2exp r-ebarrays r-acrosstic r-abodoutlier r-heatplus r-h= tscluster r-affycompatible r-bgx r-debugme r-sdmtools r-r-devices r-r-huge = r-r-filesets r-cobs r-fail r-fhtest r-ldheatmap r-accrual r-irtoys r-metap = r-penalized r-coin r r-microbenchmark r-bigmemoryextras r-rbowtie2 r-hpar r= -ihw r-genie3 r-dnabarcodes r-wrench r-flowutils r-genomationdata r-copynum= ber r-bifet r-scde r-qdnaseq r-riboseqr r-hitc r-ideoviz r-ripseeker r-cove= rageview r-grohmm r-bsgenome-dmelanogaster-ucsc-dm6 r-bsgenome-celegans-ucs= c-ce6 r-bsgenome-celegans-ucsc-ce10 r-bsgenome-mmusculus-ucsc-mm10 r-bsgeno= me-hsapiens-ucsc-hg38 r-motiv r-bsgenome-hsapiens-ncbi-grch38 r-activedrive= rwgs r-chipcomp r-bsgenome-dmelanogaster-ucsc-dm3-masked r-bsgenome-hsapien= s-ucsc-hg19-masked r-deconstructsigs r-snplocs-hsapiens-dbsnp144-grch37 r-b= sgenome-mmusculus-ucsc-mm9-masked r-motifrg r-demultiplex r-transphylo r-mb= oost r-nonnest2 r-spatialextremes r-rgdal r-picante r-crochet r-restrserve = r-assertive r-calculus arriba r-erm r-pwr r-collapsibletree r-r4rna r-confi= g r-acebayes r-stam r-rgexf r-directlabels r-argparse r-absim r-rgreat r-rp= ostgresql jamm r-msir r-flowmeans r-tclust r-topicmodels r-wordcloud r-spel= ling r-remoter r-blme r-altmeta r-glmmtmb r-abn r-parsedate ribotaper r-abc= rf r-sgloptim r-unifiedwmwqpcr r-reordercluster r-activitycounts r-adapenet= class r-acuityview r-reinforcelearn r-sloop r-tidytree r-msigdbr r-tidytext= r-oenb r-zvcv r-assertr r-tidypredict r-summarytools r-biobroom r-accelmis= sing r-abjutils r-styler r-kmer r-keyring r-bioccheck r-acs r-rxnat r-oai r= -abbyyr r-europepmc r-cgdsr r-rentrez r-rselenium r-googlesheets r-rticles = r-kableextra r-pkgdown r-acmeeqtl r-biocworkflowtools r-knitrbootstrap r-mi= tml emacs-ess r-savr r-bacon r-m3c r-anota r-nbpseq r-zfpkm roary r-xcms r-= psiplot r-ggfortify r-dlmap r-ztype r-enrichr r-useful r-statcheck r-abhgen= otyper r-ggpmisc r-acsnminer r-dae r-fastshap r-spectrum r-forecast r-actig= raphy r-ggmap r-progeny r-biosigner r-acdm r-lemon r-tidymodels r-hrbrtheme= s r-valr r-ggplotify r-actogrammr r-dalex r-ggjoy r-wiggleplotr r-pcatools = r-harmony r-fivethirtyeight r-depecher r-snapatac r-clustree r-accsda r-ada= ptalint r-chemometricswithr r-activpal r-activepathways r-fithic r-yamss r-= mast r-copywriter r-assertable r-bedr r-parcor r-ac3net r-abemus r-activity= index r-flexsurv r-spacyr r-iml r-stm r-mlr3learners r-mlr3tuning r-xkcd r-= weights r-abctools r-haplo-stats r-scdd r-acid r-adabag r-accept r-variance= partition r-factoextra r-analytics r-r2glmm r-moonbook r-catalyst r-rasterv= is r-destiny r-sjplot r-survminer r-actfrag r-abacus r-learnr r-actcd r-san= keyd3 r-tablerdash r-abcdefba r-adamethods r-vdiffr r-abtest r-abstractr r-= citr r-shapforxgboost r-radiant-data r-shinyjqui r-hierfstat r-rmetasim r-b= igpint r-aasea r-brms r-tidyposterior r-a3 r-semplot r-abseqr r-linnorm r-a= bd r-goplot r-iheatmapr r-ioniser r-velocyto ngless r-biocpkgtools r-org-ec= k12-eg-db r-abaenrichment r-biocset r-org-dr-eg-db r-org-ce-eg-db r-org-mm-= eg-db r-annotationfuncs r-biocgraph r-org-dm-eg-db r-pathview r-cistopic r-= biocor r-bicare r-seqgl r-webbioc r-reactomepa r-clusterprofiler r-phastcon= s100way-ucsc-hg19 r-msnid r-mlinterfaces r-yaqcaffy r-timeseriesexperiment = r-xbseq tetoolkit r-absfiltergsea r-sva r-sushi r-wavetiling r-pasilla r-ga= ge r-bseqsc r-topgo r-illuminahumanmethylationepicmanifest r-yarn r-bioconc= otk r-goseq r-txdb-mmusculus-ucsc-mm10-knowngene r-txdb-celegans-ucsc-ce6-e= nsgene r-annotatr r-inspect r-wavcluster r-bigmelon r-txdb-hsapiens-ucsc-hg= 38-knowngene r-atacseqqc r-scone rcas-web r-circus r-gwascat r-varianttools= r-karyoploter r-yapsa r-fourcseq r-affycoretools r-cicero-monocle3 r-motif= breakr r-variantfiltering r-genomicinteractions r-allelicimbalance r-cummer= bund r-cicero r-chipexoqual r-mutationalpatterns r-rqc r-quasr r-ldblock r-= rbamtools r-riboprofiling r-acc r-adapr r-qtl2 r-gqtlstats r-a4 r-gkmsvm r-= icobra r-soupx teximpatient fontconfig guix-data-service ganeti-instance-de= bootstrap kicad-doc cuirass emacs-guix guix-build-coordinator gwl hpcguix-w= eb guile2.2-guix ikiwiki ghc-easyplot ghc-gnuplot ocrodjvu blktrace shogun = openfoam mia unison extractpdfmark texlive-base fgallery cups-pk-helper meg= atools grub-efi grub-hybrid ganeti-instance-guix ganeti xen vlang goaccess = herbstluftwm redshift-wayland emacs-ewmctrl i3lock-fancy xss-lock keynav py= thon2-htseq pyicoteo python2-checkm-genome gess couger grit pbtranscript-to= fu miso pepr python2-ipywidgets python2-jupyter-console python2-matplotlib-= documentation python2-ipyparallel python2-ipython-cluster-helper python2-nu= mpy-documentation python2-shapely dbus-cxx liquidsfz mpdris2 jack-select py= thon-notify2 pulseaudio-dlna kbdd libjcat zplugins r-bioassayr r-diffbind e= macs-exwm-no-x-toolkit fvwm guile-present guile2.2-present gnaural calf flu= idsynth ir dvdisaster fbreader gtkwave xboard eboard gkrellm gnome-commande= r gnurobots celestia-gtk gnubik gpa wmfire lv2-mda-epiano lv2-mda-piano azr= 3 pcb2gcode seq24 tegaki-wagomu-japanese-kyoiku tegaki-zinnia-simplified-ch= inese-light tegaki-zinnia-japanese-joyo tegaki-zinnia-simplified-chinese te= gaki-wagomu-japanese-joyo tegaki-wagomu-traditional-chinese tegaki-zinnia-t= raditional-chinese tegaki-zinnia-japanese-light tegaki-zinnia-traditional-c= hinese-light tegaki-zinnia-japanese-kyoiku tegaki-wagomu-japanese tegaki-wa= gomu-simplified-chinese tegaki-zinnia-japanese python2-tegaki-recognize gtk= lick gourmet chirp virtaal wicd clipit murrine matcha-theme patchage screen= test viewnior gpick mtpaint usbguard libraqm cl-gobject-introspection ecl-c= l-gobject-introspection gtx gst123 mcabber freetalk pam-u2f hackneyed-x11-c= ursors minced sra-tools r-reqon r-liger openni2 java-pep-adapter drip kawa = liblouisutdml ruby-atoulme-antwrap java-w3c-svg java-w3c-svg java-w3c-sac c= lojure-algo-generic clojure-core-match clojure-instaparse clojure-algo-mona= ds clojure-tools-cli translate2geda java-jblas java-ecj java-osgi-service-j= dbc java-jakarta-regexp f-seq java-commons-exec java-jmh java-commons-cli j= ava-jline java-commons-exec java-fasterxml-jackson-modules-base-mrbean antl= r4 java-jgit abcl hdf-java java-osgi-service-cm bbmap java-eclipse-team-cor= e java-osgi-service-resolver java-httpcomponents-httpcore-ab java-httpcompo= nents-httpcore-nio java-httpcomponents-httpmime java-htsjdk java-picard jav= a-biojava-alignment java-surefire-junit4 tuxguitar emacs-plantuml-mode java= -tomcat josm java-eclipse-jetty-webapp java-xmlgraphics-commons maven-share= d-utils maven-compiler-plugin maven-surefire-plugin maven-resources-plugin = maven-enforcer-plugin maven-jar-plugin maven-install-plugin dropseq-tools j= ava-jaxen maven axoloti-patcher lxinput gx-slow-gear-lv2 foo-yc20 gx-satura= tor-lv2 ams-lv2 gx-vbass-preamp-lv2 jack-keyboard jack-capture amsynth whys= ynth fpm2 xournal inxi xsensors collectd sawfish xsane nitrogen xnee xdialo= g guile2.2-picture-language nip2 imv pinentry-rofi rofi-pass tint2 jgmenu l= ibcloudproviders fprintd pinentry-tty pinentry-emacs pass-tomb pinentry-gtk= 2 msmtp vala-lan guage-server libgrss phodav python2-nbxmpp skopeo msitools chezmoi wpewebki= t bluez-alsa emacs-bluetooth tlp csound cava libsoundio darkice xmp wildmid= i opensurge marble-marcher extremetuxracer mars allegro minetest cli-visual= izer conky emacs-pulseaudio-control praat libcanberra-gtk2 cl-radiance ecl-= radiance pulsemixer ponymix noisetorch pamixer fldigi multimon-ng gens-gs d= osbox desmume gzochi pipewalker azimuth povray libvisual-plugins schismtrac= ker kobodeluxe armagetronad ghc-sdl-image ri-li freegish chromium-bsu foobi= llard++ prboom-plus burgerspace kiki knights meritous abe ltris gcompris be= nnu-game-development-modules pinball pingus gnujump odamex barrage adanaxis= gpl ghc-sdl-mixer freedroidrpg tuxmath grafx2 xmoto manaplus enigma slimevo= lley tuxpaint 4dtris hyperrogue tennix einstein chroma fillets-ng lush2 bta= nks spatialite-gui brltty libtgvoip polybar i3status giac lierolibre cdemu-= client mpc123 ecasound abcde asunder ripit emacs-org-emms emacs-helm-emms e= macs-emms-mode-line-cycle ripperx orpheus thermald wmbattery qjackrcd confc= lerk avogadro2 cvassistant fet qtmips inspekt3d heimdall uefitool pokerth l= eela-zero pinentry-qt modemmanager-qt bluez-qt kapidox kimageformats qlogo = mcrl2 powertabeditor libcamera scorep-openmpi pumpa qtserialbus wpa-supplic= ant-gui librecad cutter fritzing qpdfview robocut qtpurchasing qtremoteobje= cts qtwebview materialdecoration pencil2d tipp10 q5go papagayo qsynth qjack= ctl alsa-modular-synth qbittorrent cmst sddm emacs-djvu pulseview librepcb = bitcoin-abc monero-gui flowee fulcrum bitcoin-core bitcoin-unlimited tiled = chessx the-butterfly-effect xygrib gpxsee brdf-explorer scantailor-advanced= itk-snap flameshot leocad lxqt-archiver speedcrunch xaos nheko quaternion = qmidiroute drumkv1 muse-sequencer samplv1 hydrogen padthv1 sonivox-eas fmit= synthv1 qmidiarp vmpk rosegarden wireshark qtpass keepassxc photoflare qts= pell libqglviewer qtcolorwidgets stellarium meshlab quassel kjsembed poxml = dotherside cockatrice qtwebglplugin fcitx5-chinese-addons luminance-hdr hpl= ip toutenclic trezor-agent electron-cash veusz frescobaldi flyer-composer a= symptote pyzo offlate openmolar manuskript onionshare python-pyqt-without-q= twebkit qview drawpile wsjtx js8call scribus owncloud-client qsyncthingtray= synergy mumble twinkle cool-retro-term texmaker lyx texmacs libde265 avide= mux mkvtoolnix libdc1394 qsstv kristall qjson copyq uim-qt poppler-qt4 pybi= tmessage squeak-vm spice-vdagent autofs python2-libvirt tigervnc-server xss= proxy axoloti-patcher-next lua5.1-lgi awesome lua5.2-lgi key-mon guile-sly = numlockx xf86-video-qxl xf86-video-i128 xf86-video-trident xf86-video-glint= xf86-video-vesa xf86-video-mach64 xf86-video-suncg6 xf86-video-tdfx xf86-v= ideo-tga xf86-video-openchrome xf86-video-neomagic xf86-video-voodoo xf86-i= nput-synaptics xf86-video-sis xf86-video-fbdev xf86-video-nv xf86-video-sun= ffb xf86-video-cirrus xf86-video-vmware xf86-video-freedreno xf86-video-nou= veau xf86-input-joystick xf86-input-void xf86-video-ast xf86-video-ark xf86= -input-evdev xf86-video-amdgpu xf86-video-savage xf86-video-mga xf86-video-= geode xf86-video-intel xf86-video-r128 xf86-video-siliconmotion xf86-video-= ati gtkd gcompris-qt qucs-s pcb-rnd geda-gaf openscad parcimonie beast gobb= y ingen qtractor snd lv2toweb jalv-select deluge transmission cinnamon-desk= top rust-gdk-sys rust-gtk rust-pangocairo-sys rust-gdk rust-gdk-sys rust-gt= k-sys rust-pangocairo rust-gdk rust-pangocairo scanmem mdk klavaro guile-em= acs emacs-next eless emacs-origami-el emacs-ag emacs-elmacro emacs-spacelin= e-next emacs-dart-mode emacs-deadgrep emacs-amx emacs-helm-org-contacts ema= cs-frames-only-mode emacs-html-to-hiccup emacs-refactor emacs-github-review= emacs-tagedit emacs-psc-ide emacs-boon emacs-org-contrib emacs-helm-cider = emacs-lispyville emacs-lpy emacs-evil-collection emacs-org-web-tools emacs-= robot-mode emacs-auto-sudoedit emacs-prodigy-el emacs-minitest emacs-helm-p= ass emacs-ivy-pass emacs-pass emacs-company-lua emacs-magit-todos emacs-shr= oud emacs-ob-ipython emacs-ivy-clipmenu emacs-elm-mode emacs-docker-compose= -mode emacs-typit emacs-zerodark-theme emacs-dockerfile-mode emacs-org-dril= l-table emacs-ido-ubiquitous emacs-company-reftex emacs-literate-calc-mode = emacs-execline emacs-yasnippet-snippets emacs-rg emacs-unpackaged-el emacs-= counsel-notmuch emacs-helm-lsp emacs-ccls emacs-lsp-lua-emmy emacs-company-= lsp emacs-lsp-ui emacs-lsp-ivy emacs-org-generate emacs-org2web emacs-acade= mic-phrases emacs-treemacs-extra emacs-mu4e-alert emacs-org-sidebar emacs-o= x-pandoc emacs-docker emacs-nix-mode emacs-ws-butler emacs-browse-at-remote= emacs-org-roam-bibtex emacs-repo emacs-skeletor emacs-evil-multiedit emacs= -doom-themes emacs-ample-regexps emacs-helm-company emacs-dumb-jump emacs-e= vil-exchange emacs-string-inflection emacs-equake emacs-suggest emacs-couns= el-dash emacs-helm-dash emacs-md4rd emacs-helm-slack emacs-lsp-java emacs-r= ocket-chat emacs-org-jira emacs-4clojure emacs-tldr emacs-anki-editor emacs= -webpaste emacs-edbi-sqlite emacs-company-jedi emacs-zotxt emacs-pubmed ema= cs-butler emacs-helm-org-rifle emacs-attrap emacs-dired-rsync emacs-dante e= macs-tide emacs-hy-mode emacs-helpful emacs-simple-mpc emacs-jenkinsfile-mo= de emacs-chronometrist emacs-evil-mc emacs-js2-refactor-el emacs-elfeed-org= emacs-org-trello emacs-elpy emacs-standard-dirs emacs-matrix-client emacs-= major-mode-hydra emacs-org-make-toc emacs-pyim emacs-rime emacs-ivy-posfram= e emacs-frog-jump-buffer emacs-company-posframe emacs-flycheck-grammalecte = emacspeak emacs-tramp emacs-sudo-edit emacs-racer emacs-racket-mode emacs-c= ompany-quickhelp emacs-company-auctex emacs-cdlatex emacs-org-edit-latex em= acs-picpocket emacs-exwm-edit emacs-exwm-x emacs-helm-exwm guile-studio ema= cs-mew hop emacs-wide-int presage fcitx-configtool fcitx5-gtk homebank font= manager sfxr freeciv pioneers gnome-chess dia libxmlb papirus-icon-theme ma= teria-theme greybird-gtk-theme florence cbatticon uget linuxdcpp dunst udis= kie profanity toxic libgovirt grisbi malcontent gnome-sudoku gnome-dictiona= ry goffice zeitgeist notification-daemon libdmapsharing gtg xarchiver krb5-= auth-dialog gnome-mahjongg d-feet soundconverter gdl komikku markets passwo= rdsafe dconf-editor glimpse openttd gimp-fourier gimp-resynthesizer five-or= -more network-manager-openconnect network-manager-openvpn gnome-klotski sea= horse network-manager-vpnc terminator sakura tilda deja-dup gthumb abiword = byzanz piper authenticator bluefish eog-plugins glabels gobby gpsd gpscorre= late goxel nextpnr-ice40 arachne-pnr gamine pidgin-otr purple-mattermost te= legram-purple bitlbee-purple beets-bandcamp beets-next guitarix-lv2 guitari= x gparted gnote workrave tascam-gtk paprefs dnssec-trigger lepton-eda gramp= s sylpheed volumeicon gpredict gxmessage rage terminology econnman epour ep= hoto evisum lekha edi pinentry-efl ibus-rime ibus-anthy ibus-libhangul ibus= -libpinyin libopenmpt genimage bsnes mednafen nestopia-ue emulation-station= higan sameboy mupen64plus-video-z64 mupen64plus-video-arachnoid mupen64plu= s-rsp-z64 mupen64plus-ui-console mrrescue dhewm3 ioquake3 libtcod vkquake o= penclonk supertuxkart quakespasm lugaru 7kaa endless-sky fizmo openrct2 wes= noth-server astromenace freeorion stepmania bzflag warzone2100 paperview xo= notic gzdoom yamagi-quake2 mrg mygui milkytracker qtgamepad aseba neverball= ufoai easyrpg-player augustus frotz-sdl taisei julius tesseract-engine col= obot wesnoth abbaye red-eclipse pioneer tome4 widelands trigger-rally flare= -game freedink meandmyshadow edgar solarus-quest-editor python2-kivy python= -kivy gource supertux teeworlds unknown-horizons crawl-tiles cdogs-sdl star= fighter cataclysm-dda raincat guile-chickadee tsukundere sdl2-cs guile-sdl2= jumpnbump lure-it lure-es lure-de lure-fr queen-fr queen-de sky queen lure= queen-it drascula blobwars crispy-doom chocolate-doom gnash libvideogfx cc= extractor moc ardour bs1770gain lmms reprotest emacs-telega ppsspp dolphin-= emu pcsxr mgba retroarch renpy warsow-qfusion hedgewars corsix-th gnunet-gt= k guile-gnunet blender openscenegraph flightgear directfb openmw blender co= zy rapid-photo-downloader kodi linphoneqt mssilk msopenh264 mswebrtc msamr = ungoogled-chromium-wayland xdg-desktop-portal-gtk alsa-plugins qtox clement= ine picard canta ta mpd demlo pianobar audacious cmus emacs-ob-sclang zeal qmapshack emacs-c= alibredb ghostwriter qutebrowser kiwix-desktop readymedia obs-wlrobs obs-sp= ectralizer mplayer synfigstudio emacs-ytdl emacs-youtube-dl gpodder instant= music kodi-cli youtube-viewer straw-viewer wlstream motion vapoursynth simp= lescreenrecorder anki curseradio mpv-mpris wf-recorder xarcan arcan-wayland= arcan-sdl gnome-arcade openshot you-get transcode ffmpeg omnitux childspla= y slingshot impressive retux bambam roguebox-adventures seahorse-adventures= frozen-bubble theorafile looking-glass-client wine64 geeqie mypaint inklin= greader inkscape srain gnubg quadrapassel gnome-multi-writer linsmith gnome= -planner ocaml4.07-expect ocaml4.07-merlin bap laby emacs-tuareg ocaml-xmlm= ocaml-markup ocaml-craml ocaml-jsonm ocaml-tsdl ocaml-down ocaml-stringext= ocaml-batteries ocaml-base64 ocaml-hex ocaml-merlin ocaml-ocb-stubblr ocam= l-lwt-react ocaml-reactivedata gsegrafix guile-gnome aisleriot sound-juicer= icedove-wayland geierlein icedove python-pycanberra claws-mail hexchat pav= ucontrol kitty unoconv gmtp pan notifymuch tootle aris qalculate-gtk dino u= tox mcg sonata pragha gxtuner solfege musescore blueman nicotine+ sideload = pantheon-calculator assword xournalpp pdfarranger pdfpc entangle rawtherape= e darktable polkit-gnome pasystray python2-cairocffi python-dogtail graphit= e-web freecad python-faiss python-pytest-mpl variant-tools lightgbm python-= scikit-fuzzy python-pydub nanovna-saver python-baycomp python-git-hammer fd= roidserver python-telethon electrum python-hypercorn python-sanic xeus pyth= on-onnx python-ipython-cluster-helper python-pari-jupyter r-irkernel guix-j= upyter ruby-iruby python-numpy-documentation python-matplotlib-documentatio= n python-matplotlib-venn python-shapely python-ipython-documentation fenics= weasyprint xnec2c racket eid-mw vinagre virt-viewer syncthing-gtk blanket = telegram-desktop termite scintilla geany xsnow tryton pitivi gaupol handbra= ke guvcview peek celluloid castor icedtea-web netsurf emacs-xwidgets emacs-= next-pgtk gnome-mines easytag eolie r-pore superstarfighter arx-libertatis = gnome-recipes rhythmbox gnome-music gnome-tweaks lxde spacefm gnome-photos = memphis shotwell gnome-todo chatty lollypop evolution geary gnucash emacsy = guile2.2-gi guile-gi jami nyxt cl-webkit ecl-cl-webkit astroid surf liferea= luakit midori vimb dxvk wxwidgets-gtk2 golly sooperlooper amule aegisub dj= vusmooth didjvu youtube-dl-gui dvdstyler audacity boinc-client xchm elixir = filezilla freedink-dfarc 0ad megaglest opencpn wxmaxima aria-maestosa pwsaf= e hugin poedit kicad qgis plover redshift arandr kodi-wayland waybar screen= -message xscreensaver wofi catfish elementary-xfce-icon-theme xfce4-volumed= -pulse xfce4-screensaver lightdm-gtk-greeter xfce4-whiskermenu-plugin xfce4= -statusnotifier-plugin xfce4-mount-plugin xfce4-cpufreq-plugin xfce4-stopwa= tch-plugin orage xfce4-equake-plugin xfce4-verve-plugin xfce4-embed-plugin = xfce4-mpc-plugin xfce4-notifyd xfce4-diskperf-plugin xfce4-mailwatch-plugin= xfburn xfce4-time-out-plugin xfce4-weather-plugin xfce4-systemload-plugin = xfce4-smartbookmark-plugin xfce4-netload-plugin xfce4-screenshooter xfce4-w= avelan-plugin xfce4-genmon-plugin xfce4-cpugraph-plugin xfce4-timer-plugin = xfce4-eyes-plugin xfce4-places-plugin xfce4-datetime-plugin xfce4-calculato= r-plugin xfce4-fsguard-plugin xfce xfce4-taskmanager xpra uim-gtk xpad gitg= denemo coq-stdpp coq-gappa proof-general coq-interval coq-equations coq-au= tosubst meld rednotebook pspp mousepad setzer gnome-latex gnome-builder nom= ad zrythm virt-manager saga nomacs libfreenect-opencv qiv fcitx5-configtool= kajongg kpmcore ksshaskpass kdesu qqc2-desktop-style ffmpegthumbs zeroconf= -ioslave kcachegrind kamoso kxstitch kblog kwave ksystemlog sweeper kmag km= outh kronometer ktouch audiocd-kio k3b okteta kdf kdeconnect kmplayer choqo= k ksnakeduel kfourinline kigo kubrick kblocks picmi konquest kmahjongg kspa= ceduel bovo kbreakout palapeli kreversi kbounce knavalbattle kshisen kiriki= ksquares kmines kgoldrunner killbots kollision kjumpingcube kdiamond ktube= rling ksudoku ksirk knetwalk bomber kapman granatier kolf kblackbox lskat k= lines ktorrent krdc kget konversation juk kaffeine dragon kmix kopete kleop= atra kaddressbook kdepim-runtime kmail akregator kgpg knotes korganizer kde= nlive krfb yakuake dolphin-plugins khelpcenter kmousetool krusader rsibreak= kate smb4k okular krita kdevelop lxqt-connman-applet screengrab lxqt elisa= kscreenlocker zathura-pdf-mupdf zathura-cb zathura-pdf-poppler zathura-djv= u zathura-ps python-biom-format pigx umi-tools cnvkit pplacer python-plasti= d python-deeptools nanopolish tadbit clipper python-velocyto tbsp python-bb= knn python-opentsne python-scikit-rebate python-keras python-iml python-slu= rm-magic python-moto python-pysnptools python-language-server python-hicexp= lorer python-hic2cool python-pygenometracks python-scikit-image synapse pyt= hon-feather-format python-plotly python-rpy2 fio python2-biom-format python= 2-plastid python2-pybedtools python2-plotly python2-partd python2-warpedlmm= ribodiff python-scanpy poretools gqrx jucipp vim-full enlightenment weston= numix-gtk-theme arc-theme gnome-shell-extension-gsconnect cagebreak sway p= olari gnome ghex parlatype gtranslator balsa mate-screensaver caja-extensio= ns mate Anyway--after that, I built with keep-going (-k) and the first patch seems = OK otherwise (?). But just to be clear, I'm not going to do this Rube Goldberg style test-and= -edit-unrelated-files process every time I want to merge a patch to core-up= dates. Especially not now--I have bigger fish to fry. If you can get core-updates into a state where stuff works before Raghav's = patches, I can take care of merging Raghav's patches... --Sig_/=hHv/mU4NNVtn6OkKhze_Aw Content-Type: application/pgp-signature Content-Description: OpenPGP digital signature -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEds7GsXJ0tGXALbPZ5xo1VCwwuqUFAmBTxt8ACgkQ5xo1VCww uqUlEQf/T6sLpy6uVenwnJoZpmfV3vt2IV9JrDdWBlRwGHMUwk5MYGdVwMTqYK3F k/Gm++SN9Nuz6nljyDc+vSiedgXl/dXjpFki9ZFTItpipH2boHr6t/3UvC7Mq8t+ bZ7h3sKaaIIN7Pvs0oO3E1gXmV+W68GKWiwYgdAjmM4C95DAtIQ1NmTwdQ1Z6o1b e+7c97dkBB46JxPtiGmF0ASs4z0B9nPU4V+mYtouph9f9cZ7g1vZq4PNzKX58BYu SH08rris3xXRckC/eYR+GBwJmEvHs6QRKYSKYG4ZUpONGCWdBj7cPnsZP/Ne6MIa N5T/+uCqbhYtQDgesQfqr2f5Wpj/6g== =OzM7 -----END PGP SIGNATURE----- --Sig_/=hHv/mU4NNVtn6OkKhze_Aw--