From: Aniket Patil <aniket112.patil@gmail.com>
To: 44311@debbugs.gnu.org
Cc: Aniket Patil <aniket112.patil@gmail.com>
Subject: [bug#44311] [PATCH] gnu: Add r-deconstructsigs.
Date: Thu, 29 Oct 2020 22:39:49 +0530 [thread overview]
Message-ID: <20201029170949.178605-1-aniket112.patil@gmail.com> (raw)
* gnu/packages/cran.scm (r-deconstructsigs): New variable.
---
gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 82caaf54f6..75d9ae7de2 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -24715,3 +24715,33 @@ modal regression and conditional density estimation in the
presence/absence of measurement error. Bandwidth selection is
also provided for each method.")
(license license:gpl2+)))
+
+(define-public r-deconstructsigs
+ (package
+ (name "r-deconstructsigs")
+ (version "1.8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "deconstructSigs" version))
+ (sha256
+ (base32
+ "014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a"))))
+ (properties
+ `((upstream-name . "deconstructSigs")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)
+ ("r-bsgenome-hsapiens-ucsc-hg19"
+ ,r-bsgenome-hsapiens-ucsc-hg19)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-reshape2" ,r-reshape2)))
+ (home-page
+ "https://github.com/raerose01/deconstructSigs")
+ (synopsis "Identifies Signatures Present in a Tumor Sample")
+ (description
+ "Takes sample information in the form of the fraction of
+mutations in each of 96 trinucleotide contexts and identifies
+the weighted combination of published signatures that, when summed,
+most closely reconstructs the mutational profile.")
+ (license license:gpl2+)))
--
2.28.0
next reply other threads:[~2020-10-29 17:12 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-10-29 17:09 Aniket Patil [this message]
2020-12-22 18:15 ` [bug#44311] [PATCH] gnu: Add r-deconstructsigs zimoun
2020-12-22 19:07 ` Leo Famulari
2020-12-23 8:49 ` zimoun
2020-12-22 22:38 ` bug#44311: " Ricardo Wurmus
2020-12-23 8:51 ` [bug#44311] " zimoun
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