From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:470:142:3::10]:40326) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iPlB3-0007Vh-Ic for guix-patches@gnu.org; Wed, 30 Oct 2019 06:26:11 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iPlB1-0002u7-Vh for guix-patches@gnu.org; Wed, 30 Oct 2019 06:26:09 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:40484) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1iPlB1-0002tG-RZ for guix-patches@gnu.org; Wed, 30 Oct 2019 06:26:07 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1iPlB0-0005WQ-6A for guix-patches@gnu.org; Wed, 30 Oct 2019 06:26:07 -0400 Subject: [bug#37988] [PATCH 5/6] gnu: Add r-ncdfflow. Resent-Message-ID: From: zimoun Date: Wed, 30 Oct 2019 11:25:30 +0100 Message-Id: <20191030102531.12495-5-zimon.toutoune@gmail.com> In-Reply-To: <20191030102531.12495-1-zimon.toutoune@gmail.com> References: <20191030102531.12495-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 37988@debbugs.gnu.org Cc: zimoun * gnu/packages/bioconductor.scm (r-ncdfflow): New variable. --- gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a5c6e1ed55..2636095e0f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6228,3 +6228,35 @@ Protocol buffers 2.6.0 for other R packages to compile and link against.") (description "This package provides the core data structure and API to represent and interact with the gated cytometry data.") (license license:artistic2.0))) + +(define-public r-ncdfflow + (package + (name "r-ncdfflow") + (version "2.30.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "ncdfFlow" version)) + (sha256 + (base32 + "02769pr4gipjdlknhk8adica7v37c9fviffv0qscrf9v5j26rxzw")))) + (properties + `((upstream-name . "ncdfFlow"))) + (build-system r-build-system) + (inputs `(("zlib" ,zlib))) + (propagated-inputs + `(("r-bh" ,r-bh) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-flowcore" ,r-flowcore) + ("r-flowviz" ,r-flowviz) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-rhdf5lib" ,r-rhdf5lib) + ("r-zlibbioc" ,r-zlibbioc))) + (home-page "https://bioconductor.org/packages/ncdfFlow") + (synopsis "Storage based on HDF5 for flow cytometry data") + (description + "This package provides HDF5 storage based methods and functions for +manipulation of flow cytometry data.") + (license license:artistic2.0))) -- 2.23.0