From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:470:142:3::10]:40290) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iPlB0-0007Qg-GR for guix-patches@gnu.org; Wed, 30 Oct 2019 06:26:07 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iPlAz-0002ml-4S for guix-patches@gnu.org; Wed, 30 Oct 2019 06:26:06 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:40482) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1iPlAz-0002ma-0L for guix-patches@gnu.org; Wed, 30 Oct 2019 06:26:05 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1iPlAy-0005W9-Rw for guix-patches@gnu.org; Wed, 30 Oct 2019 06:26:04 -0400 Subject: [bug#37988] [PATCH 3/6] gnu: Add r-rprotobuflib. Resent-Message-ID: From: zimoun Date: Wed, 30 Oct 2019 11:25:28 +0100 Message-Id: <20191030102531.12495-3-zimon.toutoune@gmail.com> In-Reply-To: <20191030102531.12495-1-zimon.toutoune@gmail.com> References: <20191030102531.12495-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 37988@debbugs.gnu.org Cc: zimoun * gnu/packages/bioconductor.scm (r-rprotobuflib): New variable. --- gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 92e5d3ec0b..7c1761852c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6166,3 +6166,42 @@ data.") (synopsis "Visualization for flow cytometry data") (description "This package provides visualization tools for flow cytometry data.") (license license:artistic2.0))) + +(define-public r-rprotobuflib + (package + (name "r-rprotobuflib") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "RProtoBufLib" version)) + (sha256 + (base32 + "1vhwxw7281n5wpg30ik3m1gwarfmj4b8cqxdvj0sck44yx24lphg")))) + (properties + `((upstream-name . "RProtoBufLib"))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; Contains unverified binaries: + ;; src/win/lib/{i386,x64}/libprotobuf.a + (add-after 'unpack 'remove-win-folder + (lambda _ + (delete-file-recursively "src/win") + #t)) + ;; Fix non-conventional packaging. + ;; The dependency to protobuf-2.6.0 is included as tgz and build + ;; by the R package itself. + (add-after 'unpack 'fix-wrong-hard-coded + (lambda _ + (with-directory-excursion "src" + (invoke "tar" "xf" "protobuf-2.6.0.tgz")) + (substitute* "src/protobuf-2.6.0/configure" + (("#! /bin/sh") (string-append "#!" (which "sh")))) + #t))))) + (home-page "https://bioconductor.org/packages/RProtoBufLib") + (synopsis "C++ headers and static libraries of Protocol buffers") + (description "This package provides the headers and static library of +Protocol buffers 2.6.0 for other R packages to compile and link against.") + (license license:bsd-3))) -- 2.23.0