From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:470:142:3::10]:41394) by lists.gnu.org with esmtp (Exim 4.86_2) (envelope-from ) id 1hqLus-0003RB-Ml for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:07 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hqLur-0008R4-F5 for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:06 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:57421) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1hqLur-0008Qp-Au for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:05 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1hqLur-0005Ox-6d for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:05 -0400 Subject: [bug#36793] [PATCH 04/11] gnu: Add r-flowcore. Resent-Message-ID: Received: from eggs.gnu.org ([2001:470:142:3::10]:41070) by lists.gnu.org with esmtp (Exim 4.86_2) (envelope-from ) id 1hqLuC-0003Ho-Kr for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:25 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hqLuB-0007Dt-JB for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:24 -0400 Received: from mail-wr1-x431.google.com ([2a00:1450:4864:20::431]:43438) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1hqLuB-0007Cf-DF for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:23 -0400 Received: by mail-wr1-x431.google.com with SMTP id p13so47974699wru.10 for ; Wed, 24 Jul 2019 11:22:23 -0700 (PDT) From: zimoun Date: Wed, 24 Jul 2019 20:21:57 +0200 Message-Id: <20190724182204.6818-5-zimon.toutoune@gmail.com> In-Reply-To: <20190724182204.6818-1-zimon.toutoune@gmail.com> References: <20190724182204.6818-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 36793@debbugs.gnu.org * gnu/packages/bioconductor.scm (r-flowcore): New variable. --- gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 18b5711496..3a38042537 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4799,3 +4799,33 @@ read mapping, read counting, SNP calling, structural variant detection and gene fusion discovery. It can be applied to all major sequencing techologies and to both short and long sequence reads.") (license license:gpl3))) + +(define-public r-flowcore + (package + (name "r-flowcore") + (version "1.50.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "flowCore" version)) + (sha256 + (base32 + "0pvcyzycsmgc8iw60q9xnhllfan6ihwpz3gvk8h1n9jmhpxzylan")))) + (properties `((upstream-name . "flowCore"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bh" ,r-bh) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-corpcor" ,r-corpcor) + ("r-graph" ,r-graph) + ("r-mass" ,r-mass) + ("r-matrixstats" ,r-matrixstats) + ("r-rcpp" ,r-rcpp) + ("r-rrcov" ,r-rrcov))) + (home-page + "https://bioconductor.org/packages/flowCore") + (synopsis "Basic structures for flow cytometry data") + (description + "Provides S4 data structures and basic functions to deal with flow cytometry data.") + (license license:artistic2.0))) -- 2.21.0