* [bug#32700]
@ 2018-09-11 12:40 MadalinIonel.Patrascu
2018-09-11 13:18 ` [bug#32700] [PATCH 1/3] gnu: Add r-rbenchmark pimi
0 siblings, 1 reply; 5+ messages in thread
From: MadalinIonel.Patrascu @ 2018-09-11 12:40 UTC (permalink / raw)
To: 32700
Mădălin Ionel Patrașcu
System Administrator
Bioinformatics Platform
The Berlin Institute for Medical Systems Biology (BIMSB)
Max Delbrück Center (MDC)
Robert-Rössle-Straße 10
House 87, room 1.10
13125 Berlin, Germany
^ permalink raw reply [flat|nested] 5+ messages in thread
* [bug#32700] [PATCH 1/3] gnu: Add r-rbenchmark.
2018-09-11 12:40 [bug#32700] MadalinIonel.Patrascu
@ 2018-09-11 13:18 ` pimi
2018-09-11 13:18 ` [bug#32700] [PATCH 2/3] gnu: Add r-dvmisc pimi
` (2 more replies)
0 siblings, 3 replies; 5+ messages in thread
From: pimi @ 2018-09-11 13:18 UTC (permalink / raw)
To: 32700; +Cc: pimi
gnu/packages/cran.scm (r-rbenchmark): New variable.
---
gnu/packages/cran.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 7621b3bb6..aada8acce 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5797,3 +5797,28 @@ on user-defined cut-points of accelerometer counts.
and generates data summaries. Also, includes functions to plot, analyze, and
simulate accelerometer data.")
(license license:gpl2+)))
+
+(define-public r-rbenchmark
+ (package
+ (name "r-rbenchmark")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "rbenchmark" version))
+ (sha256
+ (base32 "010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"))))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/rbenchmark/")
+ (synopsis "Benchmarking routine for R")
+ (description
+ "This @code{r-rbenchmark} package is inspired by the Perl module Benchmark,
+and is intended to facilitate benchmarking of arbitrary R code. The library
+consists of just one function, benchmark, which is a simple wrapper around
+system.time. Given a specification of the benchmarking process (counts of
+replications, evaluation environment) and an arbitrary number of expressions,
+benchmark evaluates each of the expressions in the specified environment,
+replicating the evaluation as many times as specified, and returning the results
+conveniently wrapped into a data frame.")
+ (license license:gpl2+)))
+
--
2.17.1
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [bug#32700] [PATCH 2/3] gnu: Add r-dvmisc.
2018-09-11 13:18 ` [bug#32700] [PATCH 1/3] gnu: Add r-rbenchmark pimi
@ 2018-09-11 13:18 ` pimi
2018-09-11 13:18 ` [bug#32700] [PATCH 3/3] gnu: Add r-accelerometry pimi
2018-10-02 19:46 ` bug#32700: [PATCH 1/3] gnu: Add r-rbenchmark Leo Famulari
2 siblings, 0 replies; 5+ messages in thread
From: pimi @ 2018-09-11 13:18 UTC (permalink / raw)
To: 32700; +Cc: pimi
gnu/packages/cran.scm (r-dvmisc): New variable.
---
gnu/packages/cran.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index aada8acce..f4ca7778e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5822,3 +5822,28 @@ replicating the evaluation as many times as specified, and returning the results
conveniently wrapped into a data frame.")
(license license:gpl2+)))
+(define-public r-dvmisc
+ (package
+ (name "r-dvmisc")
+ (version "1.1.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "dvmisc" version))
+ (sha256
+ (base32 "1dy0yykskwhkql19bhzmbwsgv028afc8jh9yqwbczj6f3vpv31zh"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-mass" ,r-mass)
+ ("r-rbenchmark" ,r-rbenchmark)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://cran.r-project.org/web/packages/dvmisc/")
+ (synopsis "Faster computation of common statistics and miscellaneous functions")
+ (description
+ "This package implements faster versions of base R functions (e.g. mean, standard
+deviation, covariance, weighted mean), mostly written in C++, along with
+miscellaneous functions for various purposes (e.g. create the histogram with
+fitted probability density function or probability mass function curve, create
+the body mass index groups, assess the linearity assumption in logistic
+regression).")
+ (license license:gpl2)))
--
2.17.1
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [bug#32700] [PATCH 3/3] gnu: Add r-accelerometry.
2018-09-11 13:18 ` [bug#32700] [PATCH 1/3] gnu: Add r-rbenchmark pimi
2018-09-11 13:18 ` [bug#32700] [PATCH 2/3] gnu: Add r-dvmisc pimi
@ 2018-09-11 13:18 ` pimi
2018-10-02 19:46 ` bug#32700: [PATCH 1/3] gnu: Add r-rbenchmark Leo Famulari
2 siblings, 0 replies; 5+ messages in thread
From: pimi @ 2018-09-11 13:18 UTC (permalink / raw)
To: 32700; +Cc: pimi
gnu/packages/cran.scm (r-accelerometry): New variable.
---
gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f4ca7778e..0f39080b3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5847,3 +5847,27 @@ fitted probability density function or probability mass function curve, create
the body mass index groups, assess the linearity assumption in logistic
regression).")
(license license:gpl2)))
+
+(define-public r-accelerometry
+ (package
+ (name "r-accelerometry")
+ (version "3.1.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "accelerometry" version))
+ (sha256
+ (base32 "13xzrwhr4i1nj9c8vrmfdg2rmrc8n446iihcyxmy99sm99hpzyip"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-dvmisc" ,r-dvmisc)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://cran.r-project.org/web/packages/accelerometry/")
+ (synopsis "Functions for processing accelerometer data")
+ (description
+ "This package provides a collection of functions that perform operations on
+time-series accelerometer data, such as identify the non-wear time, flag minutes
+that are part of an activity bout, and find the maximum 10-minute average count
+value. The functions are generally very flexible, allowing for a variety of
+algorithms to be implemented.")
+ (license license:gpl3)))
--
2.17.1
^ permalink raw reply related [flat|nested] 5+ messages in thread
* bug#32700: [PATCH 1/3] gnu: Add r-rbenchmark.
2018-09-11 13:18 ` [bug#32700] [PATCH 1/3] gnu: Add r-rbenchmark pimi
2018-09-11 13:18 ` [bug#32700] [PATCH 2/3] gnu: Add r-dvmisc pimi
2018-09-11 13:18 ` [bug#32700] [PATCH 3/3] gnu: Add r-accelerometry pimi
@ 2018-10-02 19:46 ` Leo Famulari
2 siblings, 0 replies; 5+ messages in thread
From: Leo Famulari @ 2018-10-02 19:46 UTC (permalink / raw)
To: pimi; +Cc: 32700-done
[-- Attachment #1: Type: text/plain, Size: 187 bytes --]
On Tue, Sep 11, 2018 at 03:18:25PM +0200, pimi wrote:
> gnu/packages/cran.scm (r-rbenchmark): New variable.
Thanks! I pushed the patch series as
d8d8844ec12c017480e83cd541e98b55e18a17f4
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^ permalink raw reply [flat|nested] 5+ messages in thread
end of thread, other threads:[~2018-10-02 19:48 UTC | newest]
Thread overview: 5+ messages (download: mbox.gz follow: Atom feed
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2018-09-11 12:40 [bug#32700] MadalinIonel.Patrascu
2018-09-11 13:18 ` [bug#32700] [PATCH 1/3] gnu: Add r-rbenchmark pimi
2018-09-11 13:18 ` [bug#32700] [PATCH 2/3] gnu: Add r-dvmisc pimi
2018-09-11 13:18 ` [bug#32700] [PATCH 3/3] gnu: Add r-accelerometry pimi
2018-10-02 19:46 ` bug#32700: [PATCH 1/3] gnu: Add r-rbenchmark Leo Famulari
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