From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: 32642@debbugs.gnu.org
Cc: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Subject: [bug#32642] [PATCH 12/16] gnu: Add python-pypairix.
Date: Wed, 5 Sep 2018 16:00:02 +0200 [thread overview]
Message-ID: <20180905140006.10783-7-ricardo.wurmus@mdc-berlin.de> (raw)
In-Reply-To: <20180905140006.10783-1-ricardo.wurmus@mdc-berlin.de>
* gnu/packages/bioinformatics.scm (python-pypairix): New variable.
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 963715b43..466e40242 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13579,3 +13579,27 @@ range envelopment. This library was designed to allow tagging text and time
intervals, where the intervals include the lower bound but not the upper
bound.")
(license license:asl2.0)))
+
+(define-public python-pypairix
+ (package
+ (name "python-pypairix")
+ (version "0.3.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pypairix" version))
+ (sha256
+ (base32
+ "0zs92b74s5v4xy2h16s15f3z6l4nnbw8x8zyif7xx5xpafjn0xss"))))
+ (build-system python-build-system)
+ ;; FIXME: the tests fail because test.support cannot be loaded:
+ ;; ImportError: cannot import name 'support'
+ (arguments '(#:tests? #f))
+ (inputs
+ `(("zlib" ,zlib)))
+ (home-page "https://github.com/4dn-dcic/pairix")
+ (synopsis "Support for querying pairix-indexed bgzipped text files")
+ (description
+ "Pypairix is a Python module for fast querying on a pairix-indexed
+bgzipped text file that contains a pair of genomic coordinates per line.")
+ (license license:expat)))
--
2.18.0
next prev parent reply other threads:[~2018-09-05 14:01 UTC|newest]
Thread overview: 18+ messages / expand[flat|nested] mbox.gz Atom feed top
2018-09-05 13:46 [bug#32642] [PATCH 00/16] gnu: Add python-pygenometracks Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 01/16] gnu: Add python-dill Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 02/16] gnu: Add python-multiprocess Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 03/16] gnu: Add python-toolz Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 04/16] gnu: Add python-cytoolz Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 05/16] gnu: Add python-sortedcontainers Ricardo Wurmus
2018-09-05 13:59 ` [bug#32642] [PATCH 06/16] gnu: Add python-cloudpickle Ricardo Wurmus
2018-09-05 13:59 ` [bug#32642] [PATCH 07/16] gnu: Add python-locket Ricardo Wurmus
2018-09-05 13:59 ` [bug#32642] [PATCH 08/16] gnu: Add python-blosc Ricardo Wurmus
2018-09-05 13:59 ` [bug#32642] [PATCH 09/16] gnu: Add python-partd Ricardo Wurmus
2018-09-05 14:00 ` [bug#32642] [PATCH 10/16] gnu: Add python-dask Ricardo Wurmus
2018-09-05 14:00 ` [bug#32642] [PATCH 11/16] gnu: Add python-intervaltree Ricardo Wurmus
2018-09-05 14:00 ` Ricardo Wurmus [this message]
2018-09-05 14:00 ` [bug#32642] [PATCH 13/16] gnu: Add python-pyfaidx Ricardo Wurmus
2018-09-05 14:00 ` [bug#32642] [PATCH 14/16] gnu: Add python-cooler Ricardo Wurmus
2018-09-05 14:07 ` [bug#32642] [PATCH 15/16] gnu: Add python-hicexplorer Ricardo Wurmus
2018-09-05 14:07 ` [bug#32642] [PATCH 16/16] gnu: Add python-pygenometracks Ricardo Wurmus
2018-09-10 14:52 ` bug#32642: " Ricardo Wurmus
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