From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: 32483@debbugs.gnu.org
Cc: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Subject: [bug#32483] [PATCH 4/4] gnu: Add python-scanpy.
Date: Mon, 20 Aug 2018 18:02:52 +0200 [thread overview]
Message-ID: <20180820160252.11219-4-ricardo.wurmus@mdc-berlin.de> (raw)
In-Reply-To: <20180820160252.11219-1-ricardo.wurmus@mdc-berlin.de>
* gnu/packages/bioinformatics.scm (python-scanpy): New variable.
---
gnu/packages/bioinformatics.scm | 36 +++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index dce8ab62f..ef9d81435 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13406,3 +13406,39 @@ conversions, region filtering, FASTA sequence extraction and more.")
;; gffread is under Expat, but gclib is under Artistic 2.0
(license (list license:expat
license:artistic2.0)))))
+
+(define-public python-scanpy
+ (package
+ (name "python-scanpy")
+ (version "1.2.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "scanpy" version))
+ (sha256
+ (base32
+ "1ak7bxms5a0yvf65prppq2g38clkv7c7jnjbnfpkh3xxv7q512jz"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-anndata" ,python-anndata)
+ ("python-igraph" ,python-igraph)
+ ("python-numba" ,python-numba)
+ ("python-joblib" ,python-joblib)
+ ("python-natsort" ,python-natsort)
+ ("python-networkx" ,python-networkx)
+ ("python-statsmodels" ,python-statsmodels)
+ ("python-scikit-learn" ,python-scikit-learn)
+ ("python-matplotlib" ,python-matplotlib)
+ ("python-pandas" ,python-pandas)
+ ("python-scipy" ,python-scipy)
+ ("python-seaborn" ,python-seaborn)
+ ("python-h5py" ,python-h5py)
+ ("python-tables" ,python-tables)))
+ (home-page "http://github.com/theislab/scanpy")
+ (synopsis "Single-Cell Analysis in Python.")
+ (description "Scanpy is a scalable toolkit for analyzing single-cell gene
+expression data. It includes preprocessing, visualization, clustering,
+pseudotime and trajectory inference and differential expression testing. The
+Python-based implementation efficiently deals with datasets of more than one
+million cells.")
+ (license license:bsd-3)))
--
2.18.0
next prev parent reply other threads:[~2018-08-20 16:13 UTC|newest]
Thread overview: 8+ messages / expand[flat|nested] mbox.gz Atom feed top
2018-08-20 15:57 [bug#32483] [PATCH] import: stackage: Support recursive importing Ricardo Wurmus
2018-08-20 16:02 ` [bug#32483] [PATCH 1/4] gnu: Add python-llvmlite Ricardo Wurmus
2018-08-20 16:02 ` [bug#32483] [PATCH 2/4] gnu: Add python-numba Ricardo Wurmus
2018-08-20 16:02 ` [bug#32483] [PATCH 3/4] gnu: Add python-anndata Ricardo Wurmus
2018-08-20 16:02 ` Ricardo Wurmus [this message]
[not found] ` <handler.32483.B.153478071316575.ack@debbugs.gnu.org>
2018-08-20 16:15 ` [bug#32483] [PATCH] import: stackage: Support recursive importing Ricardo Wurmus
2018-08-23 15:03 ` Ludovic Courtès
2018-09-13 13:18 ` bug#32483: " Ricardo Wurmus
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