all messages for Guix-related lists mirrored at yhetil.org
 help / color / mirror / code / Atom feed
From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: 32259@debbugs.gnu.org
Cc: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Subject: [bug#32259] [PATCH 4/4] gnu: Add r-blockfest.
Date: Tue, 24 Jul 2018 14:22:08 +0200	[thread overview]
Message-ID: <20180724122208.24086-4-ricardo.wurmus@mdc-berlin.de> (raw)
In-Reply-To: <20180724122208.24086-1-ricardo.wurmus@mdc-berlin.de>

* gnu/packages/cran.scm (r-blockfest): New variable.
---
 gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f1511c097..c04598141 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -4726,3 +4726,27 @@ splice site positions.")
      "BASIX provides some efficient C/C++ implementations to speed up
 calculations in R.")
     (license license:gpl2)))
+
+(define-public r-blockfest
+  (package
+    (name "r-blockfest")
+    (version "1.6")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "BlockFeST" version))
+       (sha256
+        (base32
+         "0hj7a5as7nxbgjac7lbj6qfwffx3g8x8phpf9a55f1c9cdzi73a5"))))
+    (properties `((upstream-name . "BlockFeST")))
+    (build-system r-build-system)
+    (propagated-inputs `(("r-basix" ,r-basix)))
+    (home-page "https://cran.r-project.org/web/packages/BlockFeST/")
+    (synopsis "Bayesian calculation of region-specific fixation index")
+    (description
+     "This package provides an R implementation of an extension of the
+BayeScan software for codominant markers, adding the option to group
+individual SNPs into pre-defined blocks.  A typical application of this new
+approach is the identification of genomic regions, genes, or gene sets
+containing one or more SNPs that evolved under directional selection.")
+    (license license:gpl2)))
-- 
2.18.0

  parent reply	other threads:[~2018-07-24 12:24 UTC|newest]

Thread overview: 7+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2018-07-24 12:19 [bug#32259] Add R packages from CRAN Ricardo Wurmus
2018-07-24 12:22 ` [bug#32259] [PATCH 1/4] gnu: Add r-doby Ricardo Wurmus
2018-07-24 12:22   ` [bug#32259] [PATCH 2/4] gnu: Add r-refgenome Ricardo Wurmus
2018-07-24 12:22   ` [bug#32259] [PATCH 3/4] gnu: Add r-basix Ricardo Wurmus
2018-07-29 13:33     ` Ludovic Courtès
2018-07-24 12:22   ` Ricardo Wurmus [this message]
2018-08-16 15:06   ` bug#32259: [PATCH 1/4] gnu: Add r-doby Ricardo Wurmus

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=20180724122208.24086-4-ricardo.wurmus@mdc-berlin.de \
    --to=ricardo.wurmus@mdc-berlin.de \
    --cc=32259@debbugs.gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this external index

	https://git.savannah.gnu.org/cgit/guix.git

This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.