From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:4830:134:3::10]:38153) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fhwLL-0007rB-Am for guix-patches@gnu.org; Tue, 24 Jul 2018 08:23:08 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fhwLG-0000BM-RY for guix-patches@gnu.org; Tue, 24 Jul 2018 08:23:07 -0400 Received: from debbugs.gnu.org ([208.118.235.43]:49650) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1fhwLG-0000BE-NC for guix-patches@gnu.org; Tue, 24 Jul 2018 08:23:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1fhwLG-00009g-GU for guix-patches@gnu.org; Tue, 24 Jul 2018 08:23:02 -0400 Subject: [bug#32259] [PATCH 2/4] gnu: Add r-refgenome. Resent-Message-ID: From: Ricardo Wurmus Date: Tue, 24 Jul 2018 14:22:06 +0200 Message-ID: <20180724122208.24086-2-ricardo.wurmus@mdc-berlin.de> In-Reply-To: <20180724122208.24086-1-ricardo.wurmus@mdc-berlin.de> References: <20180724122208.24086-1-ricardo.wurmus@mdc-berlin.de> MIME-Version: 1.0 Content-Type: text/plain List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 32259@debbugs.gnu.org Cc: Ricardo Wurmus * gnu/packages/cran.scm (r-refgenome): New variable. --- gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index da9b67bff..693a891a0 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4678,3 +4678,31 @@ and automatically generate usage notices.") @item miscellaneous other utilities. @end itemize") (license license:gpl2+))) + +(define-public r-refgenome + (package + (name "r-refgenome") + (version "1.7.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "refGenome" version)) + (sha256 + (base32 + "15p0ra2p1pwhy5ixbhsz1g79c5sc2aap4i4c8kil0m2syg9y45sn")))) + (properties `((upstream-name . "refGenome"))) + (build-system r-build-system) + (propagated-inputs + `(("r-dbi" ,r-dbi) + ("r-doby" ,r-doby) + ("r-rsqlite" ,r-rsqlite))) + (home-page "https://cran.r-project.org/web/packages/refGenome/") + (synopsis + "Gene and splice site annotation using annotation data from Ensembl and UCSC") + (description + "This package contains functionality for importing and managing of +downloaded genome annotation data from the Ensembl genome browser (European +Bioinformatics Institute) and from the UCSC genome browser (University of +California, Santa Cruz) and annotation routines for genomic positions and +splice site positions.") + (license license:gpl2))) -- 2.18.0