From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:4830:134:3::10]:39335) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1dj6EH-0006qe-L8 for guix-patches@gnu.org; Sat, 19 Aug 2017 12:04:06 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1dj6EE-0004Cm-IA for guix-patches@gnu.org; Sat, 19 Aug 2017 12:04:05 -0400 Received: from debbugs.gnu.org ([208.118.235.43]:37087) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1dj6EE-0004Ca-EG for guix-patches@gnu.org; Sat, 19 Aug 2017 12:04:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1dj6EE-0004zq-2g for guix-patches@gnu.org; Sat, 19 Aug 2017 12:04:02 -0400 Subject: [bug#28148] [PATCH] gnu: Add r-annotationfilter. Resent-Message-ID: Received: from eggs.gnu.org ([2001:4830:134:3::10]:39103) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1dj6DW-0006Gq-I6 for guix-patches@gnu.org; Sat, 19 Aug 2017 12:03:19 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1dj6DT-0003q1-Fo for guix-patches@gnu.org; Sat, 19 Aug 2017 12:03:18 -0400 Received: from sender-of-o51.zoho.com ([135.84.80.216]:21015) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1dj6DT-0003pV-9G for guix-patches@gnu.org; Sat, 19 Aug 2017 12:03:15 -0400 From: Ricardo Wurmus Date: Sat, 19 Aug 2017 18:03:07 +0200 Message-Id: <20170819160307.7631-1-rekado@elephly.net> List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 28148@debbugs.gnu.org Cc: Ricardo Wurmus * gnu/packages/bioinformatics.scm (r-annotationfilter): New variable. --- gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 018a26212..e8e05fff0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8311,6 +8311,30 @@ package, and for letting R applications work on datasets that are larger than the available RAM.") (license license:artistic2.0))) +(define-public r-annotationfilter + (package + (name "r-annotationfilter") + (version "1.0.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AnnotationFilter" version)) + (sha256 + (base32 + "0pxvswjzwibdfmrkdragxmzcl844z73pmkn82z92wahwa6gjfyi7")))) + (properties + `((upstream-name . "AnnotationFilter"))) + (build-system r-build-system) + (propagated-inputs + `(("r-genomicranges" ,r-genomicranges) + ("r-lazyeval" ,r-lazyeval))) + (home-page "https://github.com/Bioconductor/AnnotationFilter") + (synopsis "Facilities for filtering Bioconductor annotation resources") + (description + "This package provides classes and other infrastructure to implement +filters for manipulating Bioconductor annotation resources. The filters are +used by @code{ensembldb}, @code{Organism.dplyr}, and other packages.") + (license license:artistic2.0))) + (define-public emboss (package (name "emboss") -- 2.13.3