From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:4830:134:3::10]:51356) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1dB0L1-0003Gy-OF for guix-patches@gnu.org; Wed, 17 May 2017 10:54:08 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1dB0Kw-0005FQ-U6 for guix-patches@gnu.org; Wed, 17 May 2017 10:54:07 -0400 Received: from debbugs.gnu.org ([208.118.235.43]:48346) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1dB0Kw-0005FF-RL for guix-patches@gnu.org; Wed, 17 May 2017 10:54:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1dB0Kw-0007Na-Eb for guix-patches@gnu.org; Wed, 17 May 2017 10:54:02 -0400 Subject: bug#26963: [PATCH 1/3] gnu: Add r-aroma-light. References: <8737c3sg33.fsf@elephly.net> In-Reply-To: <8737c3sg33.fsf@elephly.net> Resent-Message-ID: From: Ricardo Wurmus Date: Wed, 17 May 2017 16:52:51 +0200 Message-Id: <20170517145253.28057-1-rekado@elephly.net> List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 26963@debbugs.gnu.org Cc: Ricardo Wurmus * gnu/packages/bioinformatics.scm (r-aroma-light): New variable. --- gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9f5d8141d..cf3da3dac 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8956,6 +8956,33 @@ algorithms; density clustering, hierarchical clustering, k-means, and the discovery of differentially expressed genes and markers.") (license license:gpl3)))) +(define-public r-aroma-light + (package + (name "r-aroma-light") + (version "3.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "aroma.light" version)) + (sha256 + (base32 + "10snykmmx36qaymyf5s1n1km8hsscyzpykcpf0mzsrcv8ml9rp8a")))) + (properties `((upstream-name . "aroma.light"))) + (build-system r-build-system) + (propagated-inputs + `(("r-matrixstats" ,r-matrixstats) + ("r-r-methodss3" ,r-r-methodss3) + ("r-r-oo" ,r-r-oo) + ("r-r-utils" ,r-r-utils))) + (home-page "https://github.com/HenrikBengtsson/aroma.light") + (synopsis "Methods for normalization and visualization of microarray data") + (description + "This package provides methods for microarray analysis that take basic +data types such as matrices and lists of vectors. These methods can be used +standalone, be utilized in other packages, or be wrapped up in higher-level +classes.") + (license license:gpl2+))) + (define htslib-for-sambamba (let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5")) (package -- 2.12.2