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From: Ricardo Wurmus <rekado@elephly.net>
To: 26963@debbugs.gnu.org
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: bug#26963: [PATCH 1/3] gnu: Add r-aroma-light.
Date: Wed, 17 May 2017 16:52:51 +0200	[thread overview]
Message-ID: <20170517145253.28057-1-rekado@elephly.net> (raw)
In-Reply-To: <8737c3sg33.fsf@elephly.net>

* gnu/packages/bioinformatics.scm (r-aroma-light): New variable.
---
 gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9f5d8141d..cf3da3dac 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8956,6 +8956,33 @@ algorithms; density clustering, hierarchical clustering, k-means, and the
 discovery of differentially expressed genes and markers.")
       (license license:gpl3))))
 
+(define-public r-aroma-light
+  (package
+    (name "r-aroma-light")
+    (version "3.6.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "aroma.light" version))
+       (sha256
+        (base32
+         "10snykmmx36qaymyf5s1n1km8hsscyzpykcpf0mzsrcv8ml9rp8a"))))
+    (properties `((upstream-name . "aroma.light")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-matrixstats" ,r-matrixstats)
+       ("r-r-methodss3" ,r-r-methodss3)
+       ("r-r-oo" ,r-r-oo)
+       ("r-r-utils" ,r-r-utils)))
+    (home-page "https://github.com/HenrikBengtsson/aroma.light")
+    (synopsis "Methods for normalization and visualization of microarray data")
+    (description
+     "This package provides methods for microarray analysis that take basic
+data types such as matrices and lists of vectors.  These methods can be used
+standalone, be utilized in other packages, or be wrapped up in higher-level
+classes.")
+    (license license:gpl2+)))
+
 (define htslib-for-sambamba
   (let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
     (package
-- 
2.12.2

  reply	other threads:[~2017-05-17 14:54 UTC|newest]

Thread overview: 5+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2017-05-17 14:39 bug#26963: Add r-edaseq Ricardo Wurmus
2017-05-17 14:52 ` Ricardo Wurmus [this message]
2017-05-17 14:52   ` bug#26963: [PATCH 2/3] gnu: Add r-deseq Ricardo Wurmus
2017-05-17 14:52   ` bug#26963: [PATCH 3/3] gnu: Add r-edaseq Ricardo Wurmus
2017-05-30 21:06   ` bug#26963: [PATCH 1/3] gnu: Add r-aroma-light Ricardo Wurmus

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