From: Ricardo Wurmus <rekado@elephly.net>
To: 26963@debbugs.gnu.org
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: bug#26963: [PATCH 1/3] gnu: Add r-aroma-light.
Date: Wed, 17 May 2017 16:52:51 +0200 [thread overview]
Message-ID: <20170517145253.28057-1-rekado@elephly.net> (raw)
In-Reply-To: <8737c3sg33.fsf@elephly.net>
* gnu/packages/bioinformatics.scm (r-aroma-light): New variable.
---
gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9f5d8141d..cf3da3dac 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8956,6 +8956,33 @@ algorithms; density clustering, hierarchical clustering, k-means, and the
discovery of differentially expressed genes and markers.")
(license license:gpl3))))
+(define-public r-aroma-light
+ (package
+ (name "r-aroma-light")
+ (version "3.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "aroma.light" version))
+ (sha256
+ (base32
+ "10snykmmx36qaymyf5s1n1km8hsscyzpykcpf0mzsrcv8ml9rp8a"))))
+ (properties `((upstream-name . "aroma.light")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-matrixstats" ,r-matrixstats)
+ ("r-r-methodss3" ,r-r-methodss3)
+ ("r-r-oo" ,r-r-oo)
+ ("r-r-utils" ,r-r-utils)))
+ (home-page "https://github.com/HenrikBengtsson/aroma.light")
+ (synopsis "Methods for normalization and visualization of microarray data")
+ (description
+ "This package provides methods for microarray analysis that take basic
+data types such as matrices and lists of vectors. These methods can be used
+standalone, be utilized in other packages, or be wrapped up in higher-level
+classes.")
+ (license license:gpl2+)))
+
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package
--
2.12.2
next prev parent reply other threads:[~2017-05-17 14:54 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2017-05-17 14:39 bug#26963: Add r-edaseq Ricardo Wurmus
2017-05-17 14:52 ` Ricardo Wurmus [this message]
2017-05-17 14:52 ` bug#26963: [PATCH 2/3] gnu: Add r-deseq Ricardo Wurmus
2017-05-17 14:52 ` bug#26963: [PATCH 3/3] gnu: Add r-edaseq Ricardo Wurmus
2017-05-30 21:06 ` bug#26963: [PATCH 1/3] gnu: Add r-aroma-light Ricardo Wurmus
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