From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: guix-devel@gnu.org
Subject: [PATCH] gnu: Add r-bsgenome-celegans-ucsc-ce10.
Date: Wed, 5 Oct 2016 14:27:20 +0200 [thread overview]
Message-ID: <20161005122720.14916-1-ricardo.wurmus@mdc-berlin.de> (raw)
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): New
variable.
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ac46fe4..76e6c31 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6929,6 +6929,38 @@ elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings
objects.")
(license license:artistic2.0)))
+(define-public r-bsgenome-celegans-ucsc-ce10
+ (package
+ (name "r-bsgenome-celegans-ucsc-ce10")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "http://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Celegans.UCSC.ce10_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"))))
+ (properties
+ `((upstream-name . "BSgenome.Celegans.UCSC.ce10")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "http://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce10/")
+ (synopsis "Full genome sequences for Worm")
+ (description
+ "This package provides full genome sequences for Caenorhabditis
+elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings
+objects.")
+ (license license:artistic2.0)))
+
(define-public r-bsgenome-dmelanogaster-ucsc-dm3
(package
(name "r-bsgenome-dmelanogaster-ucsc-dm3")
--
2.9.3
next reply other threads:[~2016-10-05 12:27 UTC|newest]
Thread overview: 3+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-10-05 12:27 Ricardo Wurmus [this message]
2016-10-05 20:26 ` [PATCH] gnu: Add r-bsgenome-celegans-ucsc-ce10 Leo Famulari
2016-10-06 8:34 ` Ricardo Wurmus
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