From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: guix-devel@gnu.org
Subject: [PATCH 07/25] gnu: Add r-genefilter.
Date: Wed, 21 Sep 2016 22:45:23 +0200 [thread overview]
Message-ID: <20160921204541.3981-7-ricardo.wurmus@mdc-berlin.de> (raw)
In-Reply-To: <20160921204541.3981-1-ricardo.wurmus@mdc-berlin.de>
* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 30f1f6a..18e688f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5092,6 +5092,32 @@ microarrays.")
"This package provides functions for plotting genomic data.")
(license license:artistic2.0)))
+(define-public r-genefilter
+ (package
+ (name "r-genefilter")
+ (version "1.54.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "genefilter" version))
+ (sha256
+ (base32
+ "1hmz6as0njvrsrdbgmk72jyclnnqvfdvp6kqv456h43ldq2ajfv5"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (propagated-inputs
+ `(("r-annotate" ,r-annotate)
+ ("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "http://bioconductor.org/packages/genefilter")
+ (synopsis "Filter genes from high-throughput experiments")
+ (description
+ "This package provides basic functions for filtering genes from
+high-throughput sequencing experiments.")
+ (license license:artistic2.0)))
+
(define-public vsearch
(package
(name "vsearch")
--
2.9.3
next prev parent reply other threads:[~2016-09-21 20:46 UTC|newest]
Thread overview: 27+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-09-21 20:45 [PATCH 01/25] gnu: Add r-hwriter Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 02/25] gnu: Add r-rjson Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 03/25] gnu: Add r-rpart Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 04/25] gnu: Add r-annotate Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 05/25] gnu: Add r-geneplotter Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 06/25] gnu: Add r-hmisc Ricardo Wurmus
2016-09-21 20:45 ` Ricardo Wurmus [this message]
2016-09-21 20:45 ` [PATCH 08/25] gnu: Add r-deseq2 Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 09/25] gnu: Add r-matrix Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 10/25] gnu: Add r-pheatmap Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 11/25] gnu: Add r-sendmailr Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 12/25] gnu: Add r-backports Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 13/25] gnu: Add r-checkmate Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 14/25] gnu: Add r-bbmisc Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 15/25] gnu: Add r-fail Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 16/25] gnu: Add r-batchjobs Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 17/25] gnu: Add r-annotationforge Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 18/25] gnu: Add r-rbgl Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 19/25] gnu: Add r-gseabase Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 20/25] gnu: Add r-category Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 21/25] gnu: Add r-gostats Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 22/25] gnu: Add r-shortread Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 23/25] gnu: Add r-systempiper Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 24/25] gnu: Add r-grohmm Ricardo Wurmus
2016-09-21 20:45 ` [PATCH 25/25] gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene Ricardo Wurmus
2016-09-24 7:44 ` [PATCH 01/25] gnu: Add r-hwriter Ludovic Courtès
2016-09-26 1:09 ` Ricardo Wurmus
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