From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH 05/25] gnu: Add r-geneplotter. Date: Wed, 21 Sep 2016 22:45:21 +0200 Message-ID: <20160921204541.3981-5-ricardo.wurmus@mdc-berlin.de> References: <20160921204541.3981-1-ricardo.wurmus@mdc-berlin.de> Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:46798) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bmoPY-0006oD-2f for guix-devel@gnu.org; Wed, 21 Sep 2016 16:46:33 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bmoPV-0001rh-Sw for guix-devel@gnu.org; Wed, 21 Sep 2016 16:46:32 -0400 Received: from pegasus.bbbm.mdc-berlin.de ([141.80.25.20]:43129) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bmoPV-0001rU-M6 for guix-devel@gnu.org; Wed, 21 Sep 2016 16:46:29 -0400 Received: from localhost (localhost [127.0.0.1]) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTP id 1825A380E12 for ; Wed, 21 Sep 2016 22:46:29 +0200 (CEST) Received: from pegasus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (pegasus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id Tl7yegjNVHL1 for ; Wed, 21 Sep 2016 22:46:23 +0200 (CEST) Received: from HTCAONE.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Wed, 21 Sep 2016 22:46:23 +0200 (CEST) In-Reply-To: <20160921204541.3981-1-ricardo.wurmus@mdc-berlin.de> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (r-geneplotter): New variable. --- gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 604d781..30f1f6a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5067,6 +5067,31 @@ data types as well.") microarrays.") (license license:artistic2.0))) +(define-public r-geneplotter + (package + (name "r-geneplotter") + (version "1.50.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "geneplotter" version)) + (sha256 + (base32 + "0lvrywl0251g4y0h0qlgkbg4l83ja5544c85z1wj30qxiy77iqc2")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotate" ,r-annotate) + ("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-lattice" ,r-lattice) + ("r-rcolorbrewer" ,r-rcolorbrewer))) + (home-page "http://bioconductor.org/packages/geneplotter") + (synopsis "Graphics functions for genomic data") + (description + "This package provides functions for plotting genomic data.") + (license license:artistic2.0))) + (define-public vsearch (package (name "vsearch") -- 2.9.3