From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH 04/25] gnu: Add r-annotate. Date: Wed, 21 Sep 2016 22:45:20 +0200 Message-ID: <20160921204541.3981-4-ricardo.wurmus@mdc-berlin.de> References: <20160921204541.3981-1-ricardo.wurmus@mdc-berlin.de> Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:46743) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bmoPS-0006hv-NG for guix-devel@gnu.org; Wed, 21 Sep 2016 16:46:27 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bmoPN-0001nP-Ia for guix-devel@gnu.org; Wed, 21 Sep 2016 16:46:25 -0400 Received: from venus.bbbm.mdc-berlin.de ([141.80.25.30]:46612) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bmoPN-0001n5-C6 for guix-devel@gnu.org; Wed, 21 Sep 2016 16:46:21 -0400 Received: from localhost (localhost [127.0.0.1]) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTP id 80931380917 for ; Wed, 21 Sep 2016 22:46:20 +0200 (CEST) Received: from venus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (venus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id RFTv1ZRTUbIh for ; Wed, 21 Sep 2016 22:46:15 +0200 (CEST) Received: from HTCAONE.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by venus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Wed, 21 Sep 2016 22:46:15 +0200 (CEST) In-Reply-To: <20160921204541.3981-1-ricardo.wurmus@mdc-berlin.de> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (r-annotate): New variable. --- gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7a27e0b..604d781 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5041,6 +5041,32 @@ dissimilarity analysis. Most of its multivariate tools can be used for other data types as well.") (license license:gpl2+))) +(define-public r-annotate + (package + (name "r-annotate") + (version "1.50.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "annotate" version)) + (sha256 + (base32 + "00wnhbjp5i6a5vyvlq4f5hs8qngjxz7fm869kla1spmd0dp2ynsy")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-dbi" ,r-dbi) + ("r-xml" ,r-xml) + ("r-xtable" ,r-xtable))) + (home-page + "http://bioconductor.org/packages/annotate") + (synopsis "Annotation for microarrays") + (description "This package provides R enviroments for the annotation of +microarrays.") + (license license:artistic2.0))) + (define-public vsearch (package (name "vsearch") -- 2.9.3