From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH 19/25] gnu: Add r-gseabase. Date: Wed, 21 Sep 2016 22:45:35 +0200 Message-ID: <20160921204541.3981-19-ricardo.wurmus@mdc-berlin.de> References: <20160921204541.3981-1-ricardo.wurmus@mdc-berlin.de> Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:48394) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bmoRB-0008KZ-Tj for guix-devel@gnu.org; Wed, 21 Sep 2016 16:48:15 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bmoR7-0002qV-Mv for guix-devel@gnu.org; Wed, 21 Sep 2016 16:48:13 -0400 Received: from pegasus.bbbm.mdc-berlin.de ([141.80.25.20]:43153) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bmoR7-0002qF-GO for guix-devel@gnu.org; Wed, 21 Sep 2016 16:48:09 -0400 Received: from localhost (localhost [127.0.0.1]) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTP id EA4DE380E12 for ; Wed, 21 Sep 2016 22:48:08 +0200 (CEST) Received: from pegasus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (pegasus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id lDRMXvDv7Jnm for ; Wed, 21 Sep 2016 22:48:03 +0200 (CEST) Received: from HTCAONE.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Wed, 21 Sep 2016 22:48:03 +0200 (CEST) In-Reply-To: <20160921204541.3981-1-ricardo.wurmus@mdc-berlin.de> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (r-gseabase): New variable. --- gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d9acb00..52fa17c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5213,6 +5213,33 @@ databases. Packages produced are intended to be used with AnnotationDbi.") the graph algorithms contained in the Boost library.") (license license:artistic2.0))) +(define-public r-gseabase + (package + (name "r-gseabase") + (version "1.34.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "GSEABase" version)) + (sha256 + (base32 + "0l3y7hq3vabildr6djsn50x0kfgihpbqxwvh7rw6k18pv5k4j72c")))) + (properties `((upstream-name . "GSEABase"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotate" ,r-annotate) + ("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-graph" ,r-graph) + ("r-xml" ,r-xml))) + (home-page "http://bioconductor.org/packages/GSEABase") + (synopsis "Gene set enrichment data structures and methods") + (description + "This package provides classes and methods to support @dfn{Gene Set +Enrichment Analysis} (GSEA).") + (license license:artistic2.0))) + (define-public vsearch (package (name "vsearch") -- 2.9.3