From mboxrd@z Thu Jan  1 00:00:00 1970
From: Leo Famulari <leo@famulari.name>
Subject: Re: [PATCH] gnu: Add mash.
Date: Wed, 31 Aug 2016 15:44:26 -0400
Message-ID: <20160831194426.GC22495@jasmine>
References: <87h9a2yweu.fsf@ike.i-did-not-set--mail-host-address--so-tickle-me>
Mime-Version: 1.0
Content-Type: text/plain; charset=us-ascii
Return-path: <guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org>
Received: from eggs.gnu.org ([2001:4830:134:3::10]:36303)
	by lists.gnu.org with esmtp (Exim 4.71)
	(envelope-from <leo@famulari.name>) id 1bfBRB-0005aP-N1
	for guix-devel@gnu.org; Wed, 31 Aug 2016 15:44:42 -0400
Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71)
	(envelope-from <leo@famulari.name>) id 1bfBR6-0006BI-OQ
	for guix-devel@gnu.org; Wed, 31 Aug 2016 15:44:41 -0400
Received: from out4-smtp.messagingengine.com ([66.111.4.28]:35440)
	by eggs.gnu.org with esmtp (Exim 4.71)
	(envelope-from <leo@famulari.name>) id 1bfBR5-00069G-IS
	for guix-devel@gnu.org; Wed, 31 Aug 2016 15:44:36 -0400
Content-Disposition: inline
In-Reply-To: <87h9a2yweu.fsf@ike.i-did-not-set--mail-host-address--so-tickle-me>
List-Id: "Development of GNU Guix and the GNU System distribution."
	<guix-devel.gnu.org>
List-Unsubscribe: <https://lists.gnu.org/mailman/options/guix-devel>,
	<mailto:guix-devel-request@gnu.org?subject=unsubscribe>
List-Archive: <http://lists.gnu.org/archive/html/guix-devel/>
List-Post: <mailto:guix-devel@gnu.org>
List-Help: <mailto:guix-devel-request@gnu.org?subject=help>
List-Subscribe: <https://lists.gnu.org/mailman/listinfo/guix-devel>,
	<mailto:guix-devel-request@gnu.org?subject=subscribe>
Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org
Sender: "Guix-devel" <guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org>
To: Marius Bakke <mbakke@fastmail.com>
Cc: guix-devel@gnu.org

On Tue, Aug 30, 2016 at 06:54:49PM +0100, Marius Bakke wrote:
> * gnu/packages/bioinformatics.scm (mash): New variable.

Thanks!

> +         (add-after 'unpack 'fix-includes
> +           (lambda _
> +             (substitute* '("src/mash/Sketch.cpp" "src/mash/CommandFind.cpp")
> +               (("^#include \"kseq\\.h\"")
> +                "#include \"htslib/kseq.h\""))
> +             #t))
> +         (add-before 'configure 'autoconf
> +           (lambda _ (zero? (system* "autoconf")))))))
> +    (native-inputs
> +     `(("autoconf" ,autoconf)
> +       ("capnproto" ,capnproto)
> +       ("htslib" ,htslib)))

Does it only need to use capnproto and htslib while building? Okay if
so.